View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_46 (Length: 394)
Name: NF9361A_low_46
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 324
Target Start/End: Complemental strand, 49122374 - 49122058
Alignment:
| Q |
8 |
caaagttccaatcaacaccgtgcacagtgatatgtcttgggtaattctgattactttgcatctcatcaattgttaatgcagaagtaagaccatctgtttt |
107 |
Q |
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| T |
49122374 |
caaagttcccatcaacaacgtgcacagtgatatgtcttgggtaattctgattactttgcatctcatcaattgttaatgcagaagtaagaccatctgtttt |
49122275 |
T |
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| Q |
108 |
ctcggattgaaccgatttaggagaacaattcttcaacttagaggttcgacaaataccatcgttcttttgtgtgtgtttgccatcatctatcttcaacatc |
207 |
Q |
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| T |
49122274 |
ctcggattgaaccgatttaggagaacaattctccaacttagaggttcgacaaataccatcgttcttttgtgtgtgtttgccatcatctatcttcaacatc |
49122175 |
T |
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| Q |
208 |
tggttttcaatctcagtagtaggaaaagattcatttgtttcatctcgtattattacctctttcactgaaggtgtaaacccccttatggtgcaggaatttg |
307 |
Q |
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| T |
49122174 |
tggttttcaatctcagtagtaggaaaagattcatttgtttcatctcgtgttattacctctttcactgaaggtgtaaacccccttatggtgcaggaatttg |
49122075 |
T |
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| Q |
308 |
tctgtggcactgacatt |
324 |
Q |
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| T |
49122074 |
tctgtggcactgacatt |
49122058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 318 - 377
Target Start/End: Original strand, 49125509 - 49125568
Alignment:
| Q |
318 |
tgacattatttttatttatgattttacaatgacatagatgagtgagcatgatcaagaagt |
377 |
Q |
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| T |
49125509 |
tgacattatttttatttatgattttacaatgacatagatgagtgagcatgatcaagaagt |
49125568 |
T |
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