View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_47 (Length: 394)
Name: NF9361A_low_47
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 40 - 369
Target Start/End: Original strand, 3098941 - 3099270
Alignment:
| Q |
40 |
tcaacatgtctctgcaatgctcaaagcaatgaactgagtaagacagagacatagacacacaaatagagtannnnnnnnnnnnnnnnnnccacctcaaaga |
139 |
Q |
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| T |
3098941 |
tcaacatgtctctgcaatgctcaaagcaatgaactgagtaagacagagacatagacacacaaatagagtattttttactttttcttttccacctcaaaga |
3099040 |
T |
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| Q |
140 |
aagtaaacaaagtcatacatatcattatggtttctcgtacccacaaatcattttatatacccacacttgtcgaccaaacactaggaaaccgcatcagtac |
239 |
Q |
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| T |
3099041 |
aagtaaacaaagtcatacatatcattatggtttctcgtacccacaaatcattttatatacccacacttgtcgaccaaacactaggaaaccgcatcagtac |
3099140 |
T |
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| Q |
240 |
ctagttccaatgttaaatacaccattaataattcataaaatcttagtatagtgctaccttaatattttcaacaacaaaaaatacagtcttaccttagctc |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3099141 |
ctagttccaatgttaaatacaccattaataattcataacatcttagtatagtgctaccttaatattttcaacaacaaaaaatacagtcttaccttagctc |
3099240 |
T |
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| Q |
340 |
acatcttcttcttactatgttctaacttca |
369 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3099241 |
acatcttcttcttactatgttctaacttca |
3099270 |
T |
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