View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_53 (Length: 377)
Name: NF9361A_low_53
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 27 - 371
Target Start/End: Complemental strand, 37430770 - 37430426
Alignment:
| Q |
27 |
ataggtaaagcattaagatttgtcaaaccagaacaccagaaaagatttgtcaaaccaggacaggaaaacactaatagtccaatgcacaagacaagactac |
126 |
Q |
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| T |
37430770 |
ataggtaaagcattaagatttgtcaaaccagaacaccagaaaagatttgtcaaaccaggacaggaaaacactaatagtccaatgcacaagacaagactac |
37430671 |
T |
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| Q |
127 |
cacaatttcaaatacaaagagaataagacatatatgcaatattcttttcccttattcattcttcttatcaactactatatgtttgcaatcaatgctttgt |
226 |
Q |
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| T |
37430670 |
cacaatttcaaatacaaagagaataagacatatatgcaatattcttttccctgattcattctgcttatcaactactatatggttgcaatcaatgcttagt |
37430571 |
T |
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| Q |
227 |
aggtcatgcttctgcatctttcaaacctcttcataacctctatagatataggctaaaataatcaaatccaaaatcctaaacaagagagtataatttcctc |
326 |
Q |
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| T |
37430570 |
aggtcatgcttctgcatctttcaaacctcttcataacatctatagatagaggctaaaataatcaaataaaaaatcctcaagaagagagtatagtttcctc |
37430471 |
T |
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| Q |
327 |
taaatggggtccttttgttttctatttccttatcttgcctttcac |
371 |
Q |
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| T |
37430470 |
taaatggggtccttttgttttctatttccttatcttgcctttcac |
37430426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 324 - 376
Target Start/End: Complemental strand, 37698509 - 37698457
Alignment:
| Q |
324 |
ctctaaatggggtccttttgttttctatttccttatcttgcctttcacctttt |
376 |
Q |
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| T |
37698509 |
ctctaaatggggtccttttttattctattgccttattttgcctttcacttttt |
37698457 |
T |
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