View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_54 (Length: 375)
Name: NF9361A_low_54
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 20 - 369
Target Start/End: Original strand, 51873632 - 51873981
Alignment:
| Q |
20 |
gtagggcccaaacctttcttcatgcataaaaacacacactcaccttcatcatcttcctcccatacaaaatacacaaacctcttacatcttctcaaacagc |
119 |
Q |
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| T |
51873632 |
gtagggcccaagcctttcttcatgcataaaaacacacactcaccttcatcatcttcctcccatacaaaatacacaaacctcttacatcttctcaaacagc |
51873731 |
T |
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| Q |
120 |
ttcaaacacaatccatccacgatcactaagcctaagctagaagcaagagcagtggtagctcttgtatattctatcctttgtacatatccaaaactacttg |
219 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51873732 |
ttcaaacacagtccatccacgatcactaagcctaagctagaagcaagagcagtggtagctcttgtatattctatcctttgtacatatccaaaactacttg |
51873831 |
T |
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| Q |
220 |
ctagtgagatatgtgtaaacctaagccatccccatttctctgtcccacacaaaccaacctcataacttctgatcccaaactactcataaatgaccctcct |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51873832 |
ctagtgagatatgtgtaaacctaagccatccccatttctctgtcccacacaaaccaacctcataacttctgatcctaaactactcataaatgaccctcct |
51873931 |
T |
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| Q |
320 |
catgatgaagttcaagatcaaaatgaacttcaaagatggccaacaccaaa |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51873932 |
catgatgaagttcaagatcaaaatgaacttcaaagatggccaactccaaa |
51873981 |
T |
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