View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9361A_low_57 (Length: 368)

Name: NF9361A_low_57
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9361A_low_57
NF9361A_low_57
[»] chr6 (26 HSPs)
chr6 (23-358)||(4564413-4564748)
chr6 (94-358)||(4592933-4593199)
chr6 (119-354)||(4617728-4617963)
chr6 (119-345)||(4602504-4602730)
chr6 (119-196)||(4506718-4506795)
chr6 (119-201)||(3172597-3172679)
chr6 (119-348)||(4517030-4517259)
chr6 (119-207)||(4481543-4481631)
chr6 (119-196)||(4514315-4514392)
chr6 (119-191)||(4489555-4489627)
chr6 (119-192)||(4461988-4462061)
chr6 (119-208)||(4470652-4470741)
chr6 (117-208)||(4557974-4558065)
chr6 (121-208)||(4586485-4586572)
chr6 (117-199)||(4571830-4571912)
chr6 (123-208)||(4561353-4561438)
chr6 (123-208)||(4575157-4575242)
chr6 (120-156)||(4266358-4266394)
chr6 (299-350)||(4299195-4299246)
chr6 (117-208)||(4612910-4613001)
chr6 (119-196)||(4484033-4484111)
chr6 (117-183)||(4580915-4580981)
chr6 (299-348)||(4568753-4568802)
chr6 (125-197)||(4259354-4259426)
chr6 (318-358)||(4266559-4266599)
chr6 (143-199)||(4599028-4599084)
[»] scaffold0199 (1 HSPs)
scaffold0199 (119-341)||(183-405)
[»] chr8 (4 HSPs)
chr8 (119-341)||(1674946-1675168)
chr8 (119-187)||(20863037-20863105)
chr8 (299-350)||(20863217-20863268)
chr8 (121-183)||(16685482-16685544)
[»] chr3 (1 HSPs)
chr3 (124-357)||(1281817-1282050)
[»] scaffold0288 (1 HSPs)
scaffold0288 (125-358)||(2918-3151)
[»] chr5 (2 HSPs)
chr5 (121-156)||(24103903-24103938)
chr5 (318-358)||(24103698-24103738)


Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 23 - 358
Target Start/End: Complemental strand, 4564748 - 4564413
Alignment:
Q  23 ataataccttattatatatgtatgtttttgtcgaaaacaaaatactcatgtattgacggatgtatgtataaccttcaagatattaactgatacttttgat 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||    
T  4564748 ataataccttattatatatgtatgtttttgtcgaaaacaaaatactcatgtatgtacggatgtatgtataaccttcaagatattaactgatacatttgat 4564649  T
Q  123 atgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgacagtat 222  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4564648 atgcagatcagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcggttaaaggatatctttgacagtat 4564549  T
Q  223 caggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaatgaa 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  4564548 caggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcttggagactctacaattgttttgaatactttccatgaa 4564449  T
Q  323 cttgagagtgatgtaataaatgctctctcctctatg 358  Q
    ||| ||||||||||||||||||||||||||||||||    
T  4564448 ctttagagtgatgtaataaatgctctctcctctatg 4564413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 94 - 358
Target Start/End: Complemental strand, 4593199 - 4592933
Alignment:
Q  94 ccttcaagatattaact--gatacttttgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaa 191  Q
    |||||||| ||||||||  | ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4593199 ccttcaagctattaactttgctacttttgatatgcagatgagagttatctaacaaatggatatttggaaactaaagtagattggattccaggtttgaaaa 4593100  T
Q  192 actttcgattaaaggatatctttgacagtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggaga 291  Q
    ||||||| || ||||| ||   ||||  |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| || |  | |    
T  4593099 actttcggttgaaggacattgctgactatatcaggacaacagatccaaatgatattatgttaaactttgtaattgatgtggctgataaagatcataaaaa 4593000  T
Q  292 ctctacaattgttttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatg 358  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4592999 ctctactattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatg 4592933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 119 - 354
Target Start/End: Complemental strand, 4617963 - 4617728
Alignment:
Q  119 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 218  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| || ||||| ||| |||||     
T  4617963 tgatatgcagatgagagttatctaacaaatggatgtttggaaactaaagtagattggattcccggtttgaaaaactttcggttgaaggacatcgttgact 4617864  T
Q  219 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 318  Q
     ||||||||||||| |||||||||||||||||||||| ||  | || || |  || |||  ||||     |||| |||| ||| ||||||||||||||||    
T  4617863 ttatcaggacaacaaatccaaatgatattatgttagaattctttatagaagttgcagatcgagttaacaaagacactactattcttttgaatactttcaa 4617764  T
Q  319 tgaacttgagagtgatgtaataaatgctctctcctc 354  Q
    ||||||||||||||||||||||||||||||||||||    
T  4617763 tgaacttgagagtgatgtaataaatgctctctcctc 4617728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 119 - 345
Target Start/End: Complemental strand, 4602730 - 4602504
Alignment:
Q  119 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 218  Q
    |||||||||||||| || |||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||| || ||||| ||  |||||     
T  4602730 tgatatgcagatgatagttatctaacaaatggatgtttggaaacaaaagtagattggattccaggtttgaaaaactttcggttgaaggacattcttgact 4602631  T
Q  219 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 318  Q
     ||||||||||||||||||||||||||||||| |||| ||  |  ||||    || |||| | ||  | |||||||||| ||| |||||||||||| |||    
T  4602630 atatcaggacaacagatccaaatgatattatggtagaattcttttttgaaattgcagatagatttaatagagactctactattcttttgaatacttacaa 4602531  T
Q  319 tgaacttgagagtgatgtaataaatgc 345  Q
    ||||||||||||||||||||| |||||    
T  4602530 tgaacttgagagtgatgtaatgaatgc 4602504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 4506795 - 4506718
Alignment:
Q  119 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaacttt 196  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||    
T  4506795 tgatatgcagatgagagttatctaacaaatggatatttggacactaaggtagactggattccaggtttgagaaacttt 4506718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 3172679 - 3172597
Alignment:
Q  119 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgatt 201  Q
    ||||||||||||||||| |||  |||||||||||||||||| ||||  || || |||||||||||||||||||||||| ||||    
T  3172679 tgatatgcagatgagagttatgaaacaaatggatatttggacactatagttgactggattccaggtttgaaaaactttagatt 3172597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 119 - 348
Target Start/End: Complemental strand, 4517259 - 4517030
Alignment:
Q  119 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 218  Q
    ||||||||||||||||| ||| | ||||||||||||||||| ||||| || || |||||||||||||||  ||||||| || |||||||  |   ||||     
T  4517259 tgatatgcagatgagagttatttgacaaatggatatttggacactaaagttgactggattccaggtttgggaaactttagactaaaggacctgcctgact 4517160  T
Q  219 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 318  Q
     ||| || || || ||||| |||||||| ||| || | ||| | ||||| ||||| ||||  |||| || ||    | | |||||||| |||||||   |    
T  4517159 ttataagaactactgatcctaatgatataatgataaaatttatcattgaagcggccgatagggttcatgaagctaattctattgttttcaatacttctga 4517060  T
Q  319 tgaacttgagagtgatgtaataaatgctct 348  Q
    ||||||||||| ||||||||||||||||||    
T  4517059 tgaacttgagaatgatgtaataaatgctct 4517030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 207
Target Start/End: Complemental strand, 4481631 - 4481543
Alignment:
Q  119 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaagga 207  Q
    ||||||||||||||||| ||| ||||| |||||||||||||  | |  ||||| |||||||||||||||||||||||| |||| |||||    
T  4481631 tgatatgcagatgagagttatttaacagatggatatttggacgcaacagtagactggattccaggtttgaaaaactttagattgaagga 4481543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 4514315 - 4514392
Alignment:
Q  119 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaacttt 196  Q
    ||||||||||||||||| ||| | ||||||||||||||||| ||||| || || |||||||||||||||  |||||||    
T  4514315 tgatatgcagatgagagttatttgacaaatggatatttggacactaaagttgactggattccaggtttgcgaaacttt 4514392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 4489555 - 4489627
Alignment:
Q  119 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaa 191  Q
    |||||||||||||||||  |||||||| ||||| ||||||| ||||| || || |||||||||||||||||||    
T  4489555 tgatatgcagatgagagtaatctaacagatggaaatttggacactaaagttgaatggattccaggtttgaaaa 4489627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 4462061 - 4461988
Alignment:
Q  119 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaa 192  Q
    ||||||||||||||||  ||||||||| |||||||||| || ||| | || || ||||||||||||||||||||    
T  4462061 tgatatgcagatgagatttatctaacagatggatatttagacactgaagttgactggattccaggtttgaaaaa 4461988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 4470741 - 4470652
Alignment:
Q  119 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 208  Q
    ||||||||||||||||| ||||||| | |||||||||| || | | | || || |||||||||||||||||||||||  |||| ||||||    
T  4470741 tgatatgcagatgagagttatctaatagatggatatttcgacattgaagttgactggattccaggtttgaaaaacttcagattgaaggat 4470652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 4558065 - 4557974
Alignment:
Q  117 tttgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 208  Q
    ||||| ||| ||||||||| ||||| ||||| ||||||||||| ||||| || ||||| |||||||| ||| | ||||||||| | ||||||    
T  4558065 tttgacatgtagatgagagttatctgacaaacggatatttggacactaaagtggattgtattccaggattgcagaactttcgactgaaggat 4557974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 4586572 - 4586485
Alignment:
Q  121 atatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 208  Q
    |||||||||| |||| ||||| ||||| ||||||||||| ||||| || || || |||||||| ||| | ||||||||| ||||||||    
T  4586572 atatgcagataagagttatctgacaaacggatatttggacactaaagtggactgtattccaggattggagaactttcgactaaaggat 4586485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 4571912 - 4571830
Alignment:
Q  117 tttgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcga 199  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||| ||||| || || || || |||||  |||| |||||||||    
T  4571912 tttgatatgcagatgagagttatctgacaaacggatatttggacactaaagtggactgtatgccaggactgaagaactttcga 4571830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 208
Target Start/End: Complemental strand, 4561438 - 4561353
Alignment:
Q  123 atgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 208  Q
    |||||||||||||  |||||||||||| |||| |||| || || || || ||||| |||||||||||||||||  |||| ||||||    
T  4561438 atgcagatgagagtgatctaacaaatgaatatctggacacgaaagttgactggatcccaggtttgaaaaacttcagattgaaggat 4561353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 208
Target Start/End: Complemental strand, 4575242 - 4575157
Alignment:
Q  123 atgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 208  Q
    |||||||||||||  |||||||||||| ||||||||| || ||  | || ||||| |||||||||||||||||  |||| ||||||    
T  4575242 atgcagatgagagtgatctaacaaatgaatatttggacacaaaaattgactggatcccaggtttgaaaaacttcagattgaaggat 4575157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 4266358 - 4266394
Alignment:
Q  120 gatatgcagatgagagctatctaacaaatggatattt 156  Q
    |||||||||||||||| ||||||||||||||||||||    
T  4266358 gatatgcagatgagagttatctaacaaatggatattt 4266394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 350
Target Start/End: Original strand, 4299195 - 4299246
Alignment:
Q  299 attgttttgaatactttcaatgaacttgagagtgatgtaataaatgctctct 350  Q
    |||||||| |||||||   |||||||||||||||||||||| ||||||||||    
T  4299195 attgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctctct 4299246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 208
Target Start/End: Original strand, 4612910 - 4613001
Alignment:
Q  117 tttgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggat 208  Q
    ||||| ||||||||||||| ||||| ||||| ||||||||||| ||||| || || || |||| ||| ||| | ||||||||| | ||||||    
T  4612910 tttgacatgcagatgagagttatctgacaaacggatatttggatactaaagtggactgtattcaaggattgcagaactttcgactgaaggat 4613001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 4484033 - 4484111
Alignment:
Q  119 tgatatgcagatgagagctatctaa-caaatggatatttggaaactaatgtagattggattccaggtttgaaaaacttt 196  Q
    ||||||||| || |||| ||||||| |||||| ||||||||| ||| | ||||| ||| |||||| |||||||||||||    
T  4484033 tgatatgcaaataagagttatctaagcaaatgtatatttggacactgaagtagactgggttccagatttgaaaaacttt 4484111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 4580981 - 4580915
Alignment:
Q  117 tttgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccagg 183  Q
    |||||| | ||||||| || ||||| ||||| ||||||||||| ||||| |||||||| ||||||||    
T  4580981 tttgatgtacagatgacagttatctcacaaacggatatttggacactaaagtagattgtattccagg 4580915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 4568802 - 4568753
Alignment:
Q  299 attgttttgaatactttcaatgaacttgagagtgatgtaataaatgctct 348  Q
    |||||||| |||||||  ||||||||||||||||||||| |||| |||||    
T  4568802 attgttttcaatacttataatgaacttgagagtgatgtagtaaaggctct 4568753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 4259354 - 4259426
Alignment:
Q  125 gcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttc 197  Q
    |||||| ||||||||||||||||||||||| |||| || || ||||| ||  |||| || ||||| |||||||    
T  4259354 gcagataagagctatctaacaaatggatatctggataccaaagtagactgtgttcctggattgaagaactttc 4259426  T

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Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 4266559 - 4266599
Alignment:
Q  318 atgaacttgagagtgatgtaataaatgctctctcctctatg 358  Q
    ||||||||||||||||||| || |||||||||| |||||||    
T  4266559 atgaacttgagagtgatgttatgaatgctctctactctatg 4266599  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 4599084 - 4599028
Alignment:
Q  143 acaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcga 199  Q
    ||||| ||||||||||||||||| |||||||| ||||| ||  || |||||||||||    
T  4599084 acaaacggatatttggaaactaaagtagattgtattcctggactgcaaaactttcga 4599028  T

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Target: scaffold0199 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 119 - 341
Target Start/End: Complemental strand, 405 - 183
Alignment:
Q  119 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 218  Q
    |||||||||||||||||  ||||||||||||||||||||||||| || || || |||||||||||||||||||||||||| || |||||| |  |||||     
T  405 tgatatgcagatgagagacatctaacaaatggatatttggaaacaaaagtcgagtggattccaggtttgaaaaactttcggttgaaggatgttgttgact 306  T
Q  219 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 318  Q
    ||||||| ||||| ||||||||||||||||||||||||||| |||||||||  |||||||||||||   |||||||||||||| ||||||||||||||||    
T  305 gtatcagaacaacggatccaaatgatattatgttagactttttaattgatgtcgctgataaagttcacagagactctacaattattttgaatactttcaa 206  T
Q  319 tgaacttgagagtgatgtaataa 341  Q
    |||||||||||||||||||||||    
T  205 tgaacttgagagtgatgtaataa 183  T

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Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 119 - 341
Target Start/End: Complemental strand, 1675168 - 1674946
Alignment:
Q  119 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgaca 218  Q
    |||||||||||||||||  ||||||||||||||||||||||||| || || || |||||||||||||||||||||||||| || |||||| |  |||||     
T  1675168 tgatatgcagatgagagacatctaacaaatggatatttggaaacaaaagtcgagtggattccaggtttgaaaaactttcggttgaaggatgttgttgact 1675069  T
Q  219 gtatcaggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaa 318  Q
    ||||||| ||||| ||||||||||||||||||||||||||| |||||||||  |||||||||||||   |||||||||||||| ||||||||||||||||    
T  1675068 gtatcagaacaacggatccaaatgatattatgttagactttttaattgatgtcgctgataaagttcacagagactctacaattattttgaatactttcaa 1674969  T
Q  319 tgaacttgagagtgatgtaataa 341  Q
    |||||||||||||||||||||||    
T  1674968 tgaacttgagagtgatgtaataa 1674946  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 20863037 - 20863105
Alignment:
Q  119 tgatatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttg 187  Q
    |||||| |||||||||| ||||||||||||||||||||||| ||||| || ||| ||||||||||||||    
T  20863037 tgatatacagatgagagttatctaacaaatggatatttggagactaaagttgatcggattccaggtttg 20863105  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 350
Target Start/End: Original strand, 20863217 - 20863268
Alignment:
Q  299 attgttttgaatactttcaatgaacttgagagtgatgtaataaatgctctct 350  Q
    |||||||| |||||||||||||| |||||||||||||| || |||| |||||    
T  20863217 attgttttcaatactttcaatgagcttgagagtgatgttatgaatgttctct 20863268  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 16685482 - 16685544
Alignment:
Q  121 atatgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccagg 183  Q
    ||||||||||||||| ||||| ||||| ||||||||||| ||||| || || || ||||||||    
T  16685482 atatgcagatgagagttatctgacaaacggatatttggacactaaagtggactgtattccagg 16685544  T

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Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 124 - 357
Target Start/End: Complemental strand, 1282050 - 1281817
Alignment:
Q  124 tgcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgacagtatc 223  Q
    |||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||| || || || ||||||||  |||||  ||||    
T  1282050 tgcagatgagagttatctaacaaatggatatttggaaacaaaagtagattggattccaggtttgaaaaatttccggttgaaggatattgttgactttatc 1281951  T
Q  224 aggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaatgaac 323  Q
    ||||||| ||||| ||| |||||||||||||| ||  | |||||   ||| |||| ||||  | |||||||||| ||| |||||||||||||||||||||    
T  1281950 aggacaagagatcgaaacgatattatgttagaattctttattgaaatggcagatagagttaatagagactctactattcttttgaatactttcaatgaac 1281851  T
Q  324 ttgagagtgatgtaataaatgctctctcctctat 357  Q
    ||||||||||||||||||||||||||||||||||    
T  1281850 ttgagagtgatgtaataaatgctctctcctctat 1281817  T

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Target: scaffold0288 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 358
Target Start/End: Original strand, 2918 - 3151
Alignment:
Q  125 gcagatgagagctatctaacaaatggatatttggaaactaatgtagattggattccaggtttgaaaaactttcgattaaaggatatctttgacagtatca 224  Q
    |||||||| || ||| | |||| |||||||||||| |  || |||||||| ||||| ||| |||||||||||||| |||||||  |   ||||  ||| |    
T  2918 gcagatgatagttatttgacaagtggatatttggacaacaaagtagattgtattccgggtatgaaaaactttcgactaaaggaccttcctgactttataa 3017  T
Q  225 ggacaacagatccaaatgatattatgttagactttgtaattgatgcggctgataaagttcctggagactctacaattgttttgaatactttcaatgaact 324  Q
    | |||| |||||  |||||| ||||| |||| ||| | ||||| || || ||| || |||   |||  ||| |||||||||| || ||||  ||||||||    
T  3018 gaacaaaagatctgaatgattttatggtagaatttttcattgaagcagcagatcaatttcacagagcttctgcaattgtttttaacacttataatgaact 3117  T
Q  325 tgagagtgatgtaataaatgctctctcctctatg 358  Q
    ||||||||||||| | ||||| |||  |||||||    
T  3118 tgagagtgatgtactgaatgcgctccactctatg 3151  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 24103938 - 24103903
Alignment:
Q  121 atatgcagatgagagctatctaacaaatggatattt 156  Q
    ||||||||||||||| ||||||||||||||||||||    
T  24103938 atatgcagatgagagttatctaacaaatggatattt 24103903  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 358
Target Start/End: Complemental strand, 24103738 - 24103698
Alignment:
Q  318 atgaacttgagagtgatgtaataaatgctctctcctctatg 358  Q
    ||||||||||||||||||| || |||||||||| |||||||    
T  24103738 atgaacttgagagtgatgttatgaatgctctctactctatg 24103698  T

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