View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9361A_low_58 (Length: 365)

Name: NF9361A_low_58
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9361A_low_58
NF9361A_low_58
[»] chr6 (3 HSPs)
chr6 (1-344)||(8698980-8699329)
chr6 (38-124)||(21775553-21775639)
chr6 (44-124)||(19836730-19836810)
[»] chr3 (2 HSPs)
chr3 (1-83)||(20597981-20598063)
chr3 (44-116)||(3813360-3813432)
[»] chr4 (1 HSPs)
chr4 (38-124)||(20624014-20624100)
[»] chr2 (1 HSPs)
chr2 (34-120)||(25561039-25561125)
[»] chr5 (2 HSPs)
chr5 (50-124)||(23332409-23332483)
chr5 (35-120)||(34895919-34896004)
[»] chr8 (1 HSPs)
chr8 (44-123)||(23704822-23704901)
[»] chr7 (1 HSPs)
chr7 (35-120)||(35662490-35662575)


Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 8698980 - 8699329
Alignment:
Q  1 aaacaaggatgccaatgaattgttggacaacagtcagatgaaaagggcaagatggggtataaaatgcagtaggtgcaagcagagtggacataacaagtcc 100  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8698980 aaacaaggatgctaatgaattgttggacaacactcagatgaaaagggcaagatggggtataaaatgcagtaggtgcaagcagagtggacataacaagtcc 8699079  T
Q  101 acctgcaagcttccaccaccaccaagtcagccctcatcaagccaaaatccaacttctgctcaaggcacatcagtgcaaaatcaacctgatgtgcaaggta 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | |||||||| ||||||| | ||  ||  ||||| |    
T  8699080 acctgcaagcttccaccaccaccaagtcaaccctcatcaagccaaaatccaacttctggtcaaaggacatcagtccaaaatccaacttctgctcaaggca 8699179  T
Q  201 ggacagtg------caacctccaccaccacttcaaaatcaacctccaccaccaacaactgtaacatcaagaaggcaaggtaggacagtgcagcatctgca 294  Q
       |||||      ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| || |||||| |  ||| |||||||||||||    
T  8699180 catcagtgcaaaatcaaccaccaccaccacttcaaaatcaacctccaccaccaacagctgtaacatcaacaacgcaaggcaatacaatgcagcatctgca 8699279  T
Q  295 aggacctcagcaacagaacccaaatggtgcaacatctgcaaggacctcaa 344  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8699280 aggacctcagcaacagaacccaactggtgcaacatctgcaaggacctcaa 8699329  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 21775639 - 21775553
Alignment:
Q  38 atgaaaagggcaagatggggtataaaatgcagtaggtgcaagcagagtggacataacaagtccacctgcaagcttccaccaccacca 124  Q
    ||||| ||||| ||||||||||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||| ||||    
T  21775639 atgaagagggctagatggggtatgaaatgcagcagatgcaaacaaagtggacataacaagtccacttgcaagcttccaccactacca 21775553  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 19836730 - 19836810
Alignment:
Q  44 agggcaagatggggtataaaatgcagtaggtgcaagcagagtggacataacaagtccacctgcaagcttccaccaccacca 124  Q
    ||||| |||||||| || || ||||| || |||||| | | ||||||||| |||||||| || ||||||||||||||||||    
T  19836730 agggctagatggggaattaagtgcagcagatgcaaggaaaatggacataataagtccacttgtaagcttccaccaccacca 19836810  T

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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 20597981 - 20598063
Alignment:
Q  1 aaacaaggatgccaatgaattgttggacaacagtcagatgaaaagggcaagatggggtataaaatgcagtaggtgcaagcaga 83  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20597981 aaacaaggatgccaatgaattgttggacaacactcagatgaaaagggcaagatggggtataaaatgcagtaggtgcaaccaga 20598063  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 3813432 - 3813360
Alignment:
Q  44 agggcaagatggggtataaaatgcagtaggtgcaagcagagtggacataacaagtccacctgcaagcttccac 116  Q
    ||||| |||||||| || ||||| || || |||||||||||||||||||| |||||||| |||||||| ||||    
T  3813432 agggctagatggggaatcaaatgtagcagatgcaagcagagtggacataataagtccacttgcaagctcccac 3813360  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 20624014 - 20624100
Alignment:
Q  38 atgaaaagggcaagatggggtataaaatgcagtaggtgcaagcagagtggacataacaagtccacctgcaagcttccaccaccacca 124  Q
    ||||| ||||| ||||||||||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||| ||||    
T  20624014 atgaagagggctagatggggtatgaaatgcagcagatgcaaacaaagtggacataacaagtccacttgcaagcttccaccactacca 20624100  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 25561125 - 25561039
Alignment:
Q  34 tcagatgaaaagggcaagatggggtataaaatgcagtaggtgcaagcagagtggacataacaagtccacctgcaagcttccaccacc 120  Q
    ||||||||| ||||| |  ||||||||||| |||||||| || || || ||||||||||||||||||||||||||||||||||||||    
T  25561125 tcagatgaagagggctaagtggggtataaagtgcagtagatgtaaacatagtggacataacaagtccacctgcaagcttccaccacc 25561039  T

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Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 23332409 - 23332483
Alignment:
Q  50 agatggggtataaaatgcagtaggtgcaagcagagtggacataacaagtccacctgcaagcttccaccaccacca 124  Q
    ||||||||||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||| ||||    
T  23332409 agatggggtatgaaatgcagcagatgcaaacaaagtggacataacaagtccacttgcaagcttccaccactacca 23332483  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 34896004 - 34895919
Alignment:
Q  35 cagatgaaaagggcaagatggggtataaaatgcagtaggtgcaagcagagtggacataacaagtccacctgcaagcttccaccacc 120  Q
    ||||||| |||||| || ||||| || || || || || || ||||| ||||||||||| |||||||| |||||||| ||||||||    
T  34896004 cagatgagaagggctaggtggggaatgaagtgtagcagatgtaagcaaagtggacataataagtccacttgcaagctgccaccacc 34895919  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 23704901 - 23704822
Alignment:
Q  44 agggcaagatggggtataaaatgcagtaggtgcaagcagagtggacataacaagtccacctgcaagcttccaccaccacc 123  Q
    ||||| ||||||||||| ||||| || || || ||||||||||||||||| |||||||| ||||| || |||||||||||    
T  23704901 agggctagatggggtatgaaatgtagcagatgtaagcagagtggacataataagtccacttgcaaactcccaccaccacc 23704822  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 35662490 - 35662575
Alignment:
Q  35 cagatgaaaagggcaagatggggtataaaatgcagtaggtgcaagcagagtggacataacaagtccacctgcaagcttccaccacc 120  Q
    ||||||| |||||| || ||||| || || || || || |||| ||| ||||||||||| |||||||| |||||||| ||||||||    
T  35662490 cagatgagaagggctaggtggggaatgaagtgtagcagctgcaggcaaagtggacataataagtccacttgcaagctgccaccacc 35662575  T

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