View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_6 (Length: 507)
Name: NF9361A_low_6
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 266 - 504
Target Start/End: Original strand, 25933596 - 25933834
Alignment:
| Q |
266 |
ctaatagttagatgtttcctttgcaagcaggcttttactaatggaatatgcaacccatcttttaagaattgctacaacattatttgaagcaatggttaag |
365 |
Q |
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| T |
25933596 |
ctaatagttagatgtttcctttgcaagcaggcttttactaatggaatatgcaacccatcttttaagaattgctacaacattatttgaagcaatggttaag |
25933695 |
T |
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| Q |
366 |
aaccttgagctgaatctgaaaacaacaaagtcatatttatcagaaaacaatggcaacatacgtgtctatcgttatccacccactgatgttggttggggca |
465 |
Q |
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| T |
25933696 |
aaccttgagctgaatctgaaaacaacaaagtcatatttatcagaaaacaatggcaacatacgtgtctatcgttatccacccactgatgttggttggggca |
25933795 |
T |
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| Q |
466 |
tggaggttcatacagatagttcagtgttgtccatattga |
504 |
Q |
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| T |
25933796 |
tggaggttcatacagatagttcagtgttgtccatattga |
25933834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 25933262 - 25933416
Alignment:
| Q |
10 |
aatatccgtctcatagtcaaggagatggaataatgtttgattgttgtcgtttttattaaactaagttgaacgccctttctctaaaaatcagaaagttaac |
109 |
Q |
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| T |
25933262 |
aatatccgtctcatagtcaaggagatggaataatgtttgattgttgtcgtttttattaaactaagttgaacgccctttctctgaaaatcagaaagttaac |
25933361 |
T |
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| Q |
110 |
atcaaaacacaataat---ggtttgttcttgaaaaatgattaatttaacatacaa |
161 |
Q |
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| T |
25933362 |
atcaaaatacaataattacggtttgttcttgaaaaatgattaatttaacatacaa |
25933416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 240 - 270
Target Start/End: Original strand, 25933495 - 25933525
Alignment:
| Q |
240 |
gaacaaccatgcataaagttattatactaat |
270 |
Q |
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| T |
25933495 |
gaacaaccatgcataaagttattatactaat |
25933525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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