View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_67 (Length: 355)
Name: NF9361A_low_67
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_67 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 7 - 355
Target Start/End: Complemental strand, 6359454 - 6359106
Alignment:
| Q |
7 |
taaattatactcgtgaatttgagtgactggtgtgtgctgatgacaatcacaatgatggtgccaacaacgaaggtattgctgctggtgttgttggaggcag |
106 |
Q |
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| T |
6359454 |
taaattttacttgtgaatttgagtgactggtgtgtgctgatgacaatcacaatgatggtgccaacaacgaaggtattgctgctggtgttgttggaggcag |
6359355 |
T |
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| Q |
107 |
ctgatgtacaatgattatgagtggaaaaacgaagggattaggttattggatcgagatttctgtaaagcttgaaggtatcaaacaatatatttaataacga |
206 |
Q |
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| T |
6359354 |
ctgatgtacaacgattatgagtggaaaaacgaagggattaggttattggatcgagatttctgtaatgcttgaaggtatcaaacaatatatttaataacga |
6359255 |
T |
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| Q |
207 |
aataataacagtagtagatagagagaattacaaggacgagcttaaattcaaaatgtctctcgtgtttgcatcaattgatttgcagtttctcaatcctttt |
306 |
Q |
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| T |
6359254 |
aataataacagtagtaaatagagagaattacaaggacgagcttaaattcaaaacgtctctcgtgtttgcatcaattgatttgcagtttctcaatcctttt |
6359155 |
T |
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| Q |
307 |
atatatggatatagcttcttgataatctgcatatactcaaggatctgac |
355 |
Q |
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| T |
6359154 |
atatatggatatagcttcttgataatctgcatatactcaaggatctgac |
6359106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 355
Target Start/End: Original strand, 32857285 - 32857355
Alignment:
| Q |
285 |
tttgcagtttctcaatccttttatatatggatatagcttcttgataatctgcatatactcaaggatctgac |
355 |
Q |
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| T |
32857285 |
tttgcagtttctcaatcattttatggatggaaatagcttcatgagaatctacatatagtcaaggatttgac |
32857355 |
T |
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