View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_70 (Length: 351)
Name: NF9361A_low_70
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_70 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 6 - 339
Target Start/End: Complemental strand, 35042566 - 35042240
Alignment:
| Q |
6 |
aatttaatgtgcaaagattcatggattggattttcaggtagatggagtacagaagggaagcttattcttatcttggtaatgttctttggtagactcaaga |
105 |
Q |
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| T |
35042566 |
aatttaatgtgcagagattcatggattggattttcaggtagatggagtacagaagggaagcttattcttatcttggtaatgttctttgggagactcaaga |
35042467 |
T |
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| Q |
106 |
aattcaatatgaatggtggcaaggcatggcacctgtcctagctaacagggtcaaaattctctctatttaattaatatacacttttataatttgaacaaag |
205 |
Q |
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| T |
35042466 |
aattcaatatgaatggtggcaaggcatggcacctgtcctagctaacagggtcaaaattctctccat----ttaatatacactttt---atttgaagaatg |
35042374 |
T |
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| Q |
206 |
atagatcaagatcctctatatttcttaggctccaatcacataaatatgaaattggtggcatccaagttaaaattgggacccatgtttgtgctccaacagc |
305 |
Q |
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| T |
35042373 |
atagatcaagatcctctatatttcttaggctccaatcacataaatatgaaattggtggcacccaagttaaaattgggacccatgtttgtgctccaacagc |
35042274 |
T |
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| Q |
306 |
tccatgtgctggtataataaggtagttctagaat |
339 |
Q |
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| T |
35042273 |
tccatgtgcttgtataataaggtagttctagaat |
35042240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 34989003 - 34988863
Alignment:
| Q |
7 |
atttaatgtgcaaagattcatggattggattttcaggtagatggagtacagaagggaagcttattcttatcttggtaatgttctttggtagactcaagaa |
106 |
Q |
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| T |
34989003 |
atttaatgtgcaaagattcatggattggattttctggtaggtggagtgcaaaagggaagtttatccttattttggtaatgttctttgggatgctcaagaa |
34988904 |
T |
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| Q |
107 |
attcaatatgaatggtggcaaggcatggcacctgtcctagc |
147 |
Q |
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| T |
34988903 |
attcaatatgaatggtggcaaagcatggaacttgtcctagc |
34988863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 15560102 - 15560236
Alignment:
| Q |
11 |
aatgtgcaaagattcatggattggattttcaggtagatggagtacagaagggaagcttattcttatcttggtaatgttctttggtagactcaagaaattc |
110 |
Q |
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| T |
15560102 |
aatgtgcaaagattcatggattggattttcgggaaagtggagtacagaggggaagtgtatccttatattggttatgttctttggtaggctcaagagattc |
15560201 |
T |
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| Q |
111 |
aatatgaatggtggcaaggcatggcacctgtccta |
145 |
Q |
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| T |
15560202 |
aatatgaaaggaggcaaagcctggcacctgtccta |
15560236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 15559829 - 15559699
Alignment:
| Q |
15 |
tgcaaagattcatggattggattttcaggtagatggagtacagaagggaagcttattcttatcttggtaatgttctttggtagactcaagaaattcaata |
114 |
Q |
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| T |
15559829 |
tgcaaagattcatggattggattttcgggaaagtggagtacagaggggaagtgtatccttatattggttatgttctttgggaggctcaagagattcaata |
15559730 |
T |
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| Q |
115 |
tgaatggtggcaaggcatggcacctgtccta |
145 |
Q |
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| T |
15559729 |
tgaaaggaggcaaagcctggcacctgtccta |
15559699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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