View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_71 (Length: 349)
Name: NF9361A_low_71
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_71 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 164 - 343
Target Start/End: Original strand, 7233207 - 7233386
Alignment:
| Q |
164 |
acttaattttcttttgagcacatggaaatatatatagcaacctagtagcatgtaggctccctccctttgcatggaatatgattctatttctaatgtgttt |
263 |
Q |
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| T |
7233207 |
acttaattttcttttgagcacatggaaatatatatagcaacctagtagcatataggctctctccctttacatgtaatatgattctatttctaatgtgttt |
7233306 |
T |
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| Q |
264 |
gtactgaaaccctcacttttcatcaagttgcttacatatggaattcagctttgaggatactaaaatctttccctccttat |
343 |
Q |
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| T |
7233307 |
gtactgaagccctcacttttcatcaagttgcttacatatggaattcagctttgaggatactaaaatctttccctccttat |
7233386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 2 - 171
Target Start/End: Original strand, 7232985 - 7233155
Alignment:
| Q |
2 |
tcaaattttgagacatatcaagcttacnnnnnnn-ctaacatgcatgttgtcagaactatttgtgtttcgcaaggtttacaaatcaaagaaaagataaat |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7232985 |
tcaaattttgagacatatcaagcttacaaaaaaaactaacatgcatgttgtcagaactatttgtgtttcgcaaggtttacaaatcaaagaaaagataaat |
7233084 |
T |
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| Q |
101 |
acattatatcatttttacttatatatttaactttaagtgataaaataaaaacaattatattttacttaatt |
171 |
Q |
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| T |
7233085 |
acattatatcatttttaattatatatttaactttaagtgataaaataaaaacaatgatattttactaaatt |
7233155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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