View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_72 (Length: 347)
Name: NF9361A_low_72
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_72 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 42 - 341
Target Start/End: Original strand, 21017770 - 21018084
Alignment:
| Q |
42 |
agactactatgatgtaatgggatatcatagggaccaaaacatatctaagcaaaataaaagtaaccttcccttcaaagattagtaaaacgtaaagttttgg |
141 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||||||||||| |
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| T |
21017770 |
agactactatgatgtaatgggatatcatagggaccaaaacatatctaagcaaaataaaagcaaccctcccttaaaaaattagtaaaacgtaaagttttgg |
21017869 |
T |
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| Q |
142 |
tcattgaagaaactttcacaaaat---------------atcaagtattgagaaaggaatgatgatacactaaataacgatgcttgagcgtatagaacat |
226 |
Q |
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| T |
21017870 |
tcattgaagaaactttcacaaaatatcaataaaacaaatatcaagtattgagaaaggaatgatgatacactaaataatgatgcttgagcgtatagaacat |
21017969 |
T |
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| Q |
227 |
cgtgaagaaattaatgcatgccgcagtgtttaatgcaggatttaactaaaaatttgttcaacaactaaaaacatatttatagttaaaggaaaacctacca |
326 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21017970 |
attgaagaaattaatgcatgccgcagtgttgaatacaggatttaactaaaaatttgttcaacaactaaaaacatatttatagttaaaggaaaacctacca |
21018069 |
T |
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| Q |
327 |
aatcaagcaacatca |
341 |
Q |
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| T |
21018070 |
aatcaagcaacatca |
21018084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 1429811 - 1429725
Alignment:
| Q |
162 |
aaatatcaagtattgagaaaggaatgatgatacactaaataacgatgcttgagcgtatagaacatcgtgaagaaattaatgcatgcc |
248 |
Q |
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| T |
1429811 |
aaatattaagtattgagcaagggataatgatacactagataatgatgcttgagcatatagaacattgtgaagagatcaatgcatgcc |
1429725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 1436273 - 1436212
Alignment:
| Q |
280 |
ttgttcaacaactaaaaacatatttatagttaaaggaaaacctaccaaatcaagcaacatca |
341 |
Q |
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| T |
1436273 |
ttgttcaactactaatgacatatttaaagttaaaggaaaacctacccaatcaagcaatatca |
1436212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 1436348 - 1436299
Alignment:
| Q |
230 |
gaagaaattaatgcatgccgcagtgtttaatgcaggatttaactaaaaat |
279 |
Q |
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| T |
1436348 |
gaagaaattaatgcatgccacagtgttggaggcagaatttaactaaaaat |
1436299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 1441773 - 1441716
Alignment:
| Q |
188 |
atgatacactaaataacgatgcttgagcgtatagaacatcgtgaagaaattaatgcatgc |
247 |
Q |
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|||||||||||||||| ||||||||| ||||||||||| |||||| |||||| ||||| |
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| T |
1441773 |
atgatacactaaataatgatgcttga--gtatagaacattatgaagagattaattcatgc |
1441716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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