View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9361A_low_78 (Length: 340)

Name: NF9361A_low_78
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9361A_low_78
NF9361A_low_78
[»] scaffold0024 (3 HSPs)
scaffold0024 (5-137)||(35824-35956)
scaffold0024 (134-241)||(36102-36209)
scaffold0024 (239-323)||(36247-36331)
[»] chr4 (12 HSPs)
chr4 (247-324)||(46737260-46737340)
chr4 (247-324)||(779749-779830)
chr4 (247-315)||(32004426-32004494)
chr4 (247-315)||(55292317-55292385)
chr4 (247-312)||(53599344-53599409)
chr4 (247-315)||(52708528-52708596)
chr4 (247-324)||(16467870-16467949)
chr4 (247-297)||(27924034-27924084)
chr4 (247-313)||(38179848-38179914)
chr4 (180-241)||(34316884-34316945)
chr4 (188-241)||(50620515-50620568)
chr4 (188-240)||(38721518-38721570)
[»] chr5 (3 HSPs)
chr5 (247-324)||(39075012-39075089)
chr5 (247-321)||(40197643-40197720)
chr5 (247-315)||(3247717-3247785)
[»] chr8 (6 HSPs)
chr8 (247-315)||(11517601-11517669)
chr8 (247-308)||(26750484-26750545)
chr8 (180-240)||(33700094-33700154)
chr8 (247-303)||(45120977-45121033)
chr8 (247-294)||(21575457-21575504)
chr8 (241-315)||(26040119-26040192)
[»] chr6 (12 HSPs)
chr6 (247-315)||(9062887-9062955)
chr6 (247-324)||(27133931-27134011)
chr6 (248-301)||(23898805-23898858)
chr6 (55-91)||(2659679-2659715)
chr6 (247-307)||(8307920-8307980)
chr6 (5-80)||(3004375-3004459)
chr6 (179-234)||(5495443-5495498)
chr6 (240-315)||(31238328-31238403)
chr6 (240-315)||(31247698-31247773)
chr6 (180-237)||(10298595-10298652)
chr6 (55-87)||(2998071-2998103)
chr6 (275-315)||(17848240-17848280)
[»] chr3 (9 HSPs)
chr3 (247-315)||(45745520-45745588)
chr3 (247-315)||(51672522-51672590)
chr3 (247-297)||(11083228-11083278)
chr3 (247-324)||(24924566-24924643)
chr3 (180-240)||(15332827-15332887)
chr3 (180-240)||(26406028-26406088)
chr3 (242-315)||(34809152-34809225)
chr3 (180-240)||(25527582-25527642)
chr3 (180-240)||(44561965-44562025)
[»] chr2 (4 HSPs)
chr2 (247-315)||(37807251-37807319)
chr2 (249-315)||(33839597-33839661)
chr2 (238-309)||(37985152-37985223)
chr2 (180-240)||(11931846-11931906)
[»] chr1 (10 HSPs)
chr1 (254-324)||(5302383-5302456)
chr1 (251-315)||(44107710-44107774)
chr1 (247-321)||(27858723-27858797)
chr1 (242-309)||(25113813-25113879)
chr1 (247-315)||(14321056-14321124)
chr1 (247-315)||(24084158-24084226)
chr1 (247-315)||(35838356-35838423)
chr1 (188-240)||(4302296-4302348)
chr1 (247-291)||(15646142-15646186)
chr1 (265-309)||(33776702-33776746)
[»] chr7 (4 HSPs)
chr7 (242-324)||(24613196-24613278)
chr7 (247-315)||(47639505-47639573)
chr7 (247-310)||(28749930-28749993)
chr7 (247-315)||(10980666-10980734)


Alignment Details
Target: scaffold0024 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 35824 - 35956
Alignment:
Q  5 cattcatatcatcaaccaagctggacaatgacatcttgagagaaaatgaaaagtttcaagtcttttgacactccctcgtatccttatgaagattttcata 104  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35824 cattcatatcatcaaccaagctggacaatgacatcttgaaagaaaatgaaaagtttcaagtcttttgacactccctcgtatccttatgaagattttcata 35923  T
Q  105 tttcttatttaatatttgtctctatttaatact 137  Q
    |||||||||||||||||||||||||||||||||    
T  35924 tttcttatttaatatttgtctctatttaatact 35956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 134 - 241
Target Start/End: Original strand, 36102 - 36209
Alignment:
Q  134 tactatttcaaaaaggtaatcatatgatagacacagtcttatttatcatgtcgcagtcaaccactccacatatgccaatgcacatctttaatcattaata 233  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || ||||||||||||||||||||    
T  36102 tactatttcaaaaaggtaatcatatgatagacacagtcttatttatcatgtcgcagtcaaccactccatacatgccgatacacatctttaatcattaata 36201  T
Q  234 tttttaag 241  Q
    ||||||||    
T  36202 tttttaag 36209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 239 - 323
Target Start/End: Original strand, 36247 - 36331
Alignment:
Q  239 aagactattatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtttttaatga 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  36247 aagactattatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaagtcaaaaagttatttttaatga 36331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 46737260 - 46737340
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaag---ttgtttttaatgaa 324  Q
    |||||||||| |||||||||||| | |||||| |||||||||||||||||||||||||||||||   ||||||||||||||    
T  46737260 tatagaaattctgcattggaaattgatgaaaagtggaatgtttaactttatgaaaatcaaaaagttattgtttttaatgaa 46737340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 779749 - 779830
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaa----gttgtttttaatgaa 324  Q
    ||||||||||||||||| ||||| |||||||| | |||||||||||||||||||| |||||||    |||||||||||||||    
T  779749 tatagaaattatgcatttgaaattggtgaaaagttgaatgtttaactttatgaaagtcaaaaaagttgttgtttttaatgaa 779830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 315
Target Start/End: Original strand, 32004426 - 32004494
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    |||||||||||||||||  |||| || ||||| |||||||||||||||||||||| |||||||||||||    
T  32004426 tatagaaattatgcatttaaaattggggaaaagtggaatgtttaactttatgaaagtcaaaaagttgtt 32004494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 55292385 - 55292317
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    ||||||||||||| |||  |||| |||||||| || ||||||||| |||||||||||||||||||||||    
T  55292385 tatagaaattatgtattaaaaattggtgaaaactgaaatgtttaattttatgaaaatcaaaaagttgtt 55292317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 53599344 - 53599409
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagtt 312  Q
    |||||||||||| |||| ||||| | ||||||||| ||||||||||||||||||| | ||||||||    
T  53599344 tatagaaattatacattagaaattgatgaaaaatgtaatgtttaactttatgaaagtaaaaaagtt 53599409  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 52708596 - 52708528
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    |||||||||| | ||||| ||||  ||||||| | |||||||||||||||||||| |||||||||||||    
T  52708596 tatagaaattgtacattgaaaattagtgaaaagttgaatgtttaactttatgaaagtcaaaaagttgtt 52708528  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 324
Target Start/End: Complemental strand, 16467949 - 16467870
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaag---ttgtttttaatgaa 324  Q
    ||||||||||||||||||||||| | |||||  || ||||||||||||||||||| | ||||||   ||||||||||||||    
T  16467949 tatagaaattatgcattggaaattgatgaaagttg-aatgtttaactttatgaaagtaaaaaagttattgtttttaatgaa 16467870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 297
Target Start/End: Complemental strand, 27924084 - 27924034
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttat 297  Q
    ||||||||||||||||||||||| |||| ||| | ||||||||||||||||    
T  27924084 tatagaaattatgcattggaaattggtggaaagttgaatgtttaactttat 27924034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 38179848 - 38179914
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttg 313  Q
    ||||||||||||| ||| |||||   |||||| | |||||||||||||||||||| |||||||||||    
T  38179848 tatagaaattatgtattagaaatttatgaaaagttgaatgtttaactttatgaaagtcaaaaagttg 38179914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 34316945 - 34316884
Alignment:
Q  180 catgtcgcagtcaaccactccacatatgccaatgcacatctttaatcattaatatttttaag 241  Q
    ||||||||||||||||||| |||| |||||||| || | |||| ||||||||||| ||||||    
T  34316945 catgtcgcagtcaaccacttcacacatgccaatacataactttgatcattaatatctttaag 34316884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 50620515 - 50620568
Alignment:
Q  188 agtcaaccactccacatatgccaatgcacatctttaatcattaatatttttaag 241  Q
    ||||||||||| |||||||| |||||||||  ||||| | ||||||||||||||    
T  50620515 agtcaaccacttcacatatgtcaatgcacaattttaaccgttaatatttttaag 50620568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 38721570 - 38721518
Alignment:
Q  188 agtcaaccactccacatatgccaatgcacatctttaatcattaatatttttaa 240  Q
    ||||||||||| ||||||||||||||||||  ||| ||| ||||||| |||||    
T  38721570 agtcaaccacttcacatatgccaatgcacaattttgatcgttaatatctttaa 38721518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 39075012 - 39075089
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtttttaatgaa 324  Q
    |||||||||||||||||| |||| | | |||  |||||||||||||||||| ||| ||||||||||||||||||||||    
T  39075012 tatagaaattatgcattgaaaattgataaaaggtggaatgtttaactttataaaagtcaaaaagttgtttttaatgaa 39075089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 40197720 - 40197643
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaa---gttgtttttaat 321  Q
    |||||||||||||||||||||||  ||||||| |||||||||||| ||||| ||||| |||||   ||||||||||||    
T  40197720 tatagaaattatgcattggaaattagtgaaaagtggaatgtttaattttataaaaataaaaaaatcgttgtttttaat 40197643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 3247785 - 3247717
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    ||||||| |||||||||  |||| |||||||| || |||||||||||| |||||| | |||||||||||    
T  3247785 tatagaagttatgcattaaaaattggtgaaaagtgtaatgtttaacttcatgaaagtaaaaaagttgtt 3247717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 11517669 - 11517601
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    |||| |||||||||||||||||| ||| |||| | |||||||||||||||||||| |||||||||||||    
T  11517669 tataaaaattatgcattggaaattggtaaaaagtagaatgtttaactttatgaaagtcaaaaagttgtt 11517601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 308
Target Start/End: Complemental strand, 26750545 - 26750484
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaa 308  Q
    ||||||||||||| ||||||||| | |||||||||  |||||||||||||||||| ||||||    
T  26750545 tatagaaattatgtattggaaattgatgaaaaatgagatgtttaactttatgaaagtcaaaa 26750484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 33700094 - 33700154
Alignment:
Q  180 catgtcgcagtcaaccactccacatatgccaatgcacatctttaatcattaatatttttaa 240  Q
    ||||||||||||||||||| |||| |||||||| |||| |||| | ||||||||| |||||    
T  33700094 catgtcgcagtcaaccactgcacacatgccaatacacaactttgaccattaatatctttaa 33700154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 45120977 - 45121033
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaat 303  Q
    |||||||||||||||| |||| | |||||||| |||||| ||||||||||| |||||    
T  45120977 tatagaaattatgcatcggaagttggtgaaaagtggaatatttaactttataaaaat 45121033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 21575457 - 21575504
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactt 294  Q
    |||||||||||| |||||||||| ||| |||||| |||||||||||||    
T  21575457 tatagaaattatacattggaaattggttaaaaatagaatgtttaactt 21575504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 26040119 - 26040192
Alignment:
Q  241 gactattatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    ||||| |||||||||| |||||||||||| | |||||| ||||| |||| | ||||||||| || ||||||||||    
T  26040119 gactaatatagaaattttgcattggaaat-gatgaaaagtggaaagtttcattttatgaaagtcgaaaagttgtt 26040192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 9062955 - 9062887
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||||||||||||   |||||||||||    
T  9062955 tatagaaattatgcattggaaattggtgaaaagttgaatgtttaactttatgaaagataaaaagttgtt 9062887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 27133931 - 27134011
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaa---gttgtttttaatgaa 324  Q
    ||||| |||| ||||||| |||| |||||||| |||||||||||||| ||||||| | |||||   |||||||||||||||    
T  27133931 tatagtaattttgcattgaaaattggtgaaaagtggaatgtttaactatatgaaagtaaaaaaattgttgtttttaatgaa 27134011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 23898858 - 23898805
Alignment:
Q  248 atagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaa 301  Q
    |||||||||||| ||||||||| | || ||| ||||||||||||||||||||||    
T  23898858 atagaaattatgtattggaaattgatggaaagtggaatgtttaactttatgaaa 23898805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 2659679 - 2659715
Alignment:
Q  55 aagtttcaagtcttttgacactccctcgtatccttat 91  Q
    |||||||||||||||||||||||||| ||||||||||    
T  2659679 aagtttcaagtcttttgacactcccttgtatccttat 2659715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 8307920 - 8307980
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaa 307  Q
    ||||||||||||||||||||||| | |||||| |||||||||| | ||||| ||| |||||    
T  8307920 tatagaaattatgcattggaaattgatgaaaagtggaatgtttgattttataaaagtcaaa 8307980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 3004375 - 3004459
Alignment:
Q  5 cattcatatcatcaaccaagctggacaatgacatcttgagag--------aaaatgaaaag-tttcaagtcttttgacactccct 80  Q
    |||| |||||||| ||||||||||| |||||||| |||||||        ||||||||||| |||||||||||||||||||||||    
T  3004375 cattgatatcatccaccaagctggagaatgacatattgagagttagcaagaaaatgaaaagctttcaagtcttttgacactccct 3004459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 5495498 - 5495443
Alignment:
Q  179 tcatgtcgcagtcaaccactccacatatgccaatgcacatctttaatcattaatat 234  Q
    |||||||||||||||||||| |||||||| ||||  ||| |||| |||||||||||    
T  5495498 tcatgtcgcagtcaaccactgcacatatgtcaatatacaactttgatcattaatat 5495443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 31238328 - 31238403
Alignment:
Q  240 agactattatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    |||||| |||||||||| |||||||||||  | |||||| || ||||||  ||||||| ||| |||||||||||||    
T  31238328 agactaatatagaaattttgcattggaaaatgatgaaaagtgaaatgttccactttataaaagtcaaaaagttgtt 31238403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 31247698 - 31247773
Alignment:
Q  240 agactattatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    |||||| |||||||||| |||||||||||  | |||||| || ||||||  ||||||| ||| |||||||||||||    
T  31247698 agactaatatagaaattttgcattggaaaatgatgaaaagtgaaatgttccactttataaaagtcaaaaagttgtt 31247773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 10298595 - 10298652
Alignment:
Q  180 catgtcgcagtcaaccactccacatatgccaatgcacatctttaatcattaatatttt 237  Q
    |||||||||||||||||||  ||| |||||||| |||| |||| | ||||||||||||    
T  10298595 catgtcgcagtcaaccactgtacacatgccaatacacaactttgaccattaatatttt 10298652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 2998071 - 2998103
Alignment:
Q  55 aagtttcaagtcttttgacactccctcgtatcc 87  Q
    ||||||||||||||||||||||||||| |||||    
T  2998071 aagtttcaagtcttttgacactccctcttatcc 2998103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 315
Target Start/End: Complemental strand, 17848280 - 17848240
Alignment:
Q  275 aaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    |||| |||||||||||||||||| ||||||||| |||||||    
T  17848280 aaaagtggaatgtttaactttataaaaatcaaatagttgtt 17848240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 315
Target Start/End: Original strand, 45745520 - 45745588
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    |||||||||||||||||| |||| | | ||||||||||||||||||||||||||| ||||||| |||||    
T  45745520 tatagaaattatgcattgaaaattgataaaaaatggaatgtttaactttatgaaagtcaaaaaattgtt 45745588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 315
Target Start/End: Original strand, 51672522 - 51672590
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    ||||||||||||||||| ||||| ||||||||||| ||||||||||||||| ||| | |||||| ||||    
T  51672522 tatagaaattatgcattagaaattggtgaaaaatgaaatgtttaactttattaaagttaaaaagctgtt 51672590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 11083228 - 11083278
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttat 297  Q
    ||||||||||||||| |||||||  ||||||||||||||||||||||||||    
T  11083228 tatagaaattatgcaatggaaatgagtgaaaaatggaatgtttaactttat 11083278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 324
Target Start/End: Complemental strand, 24924643 - 24924566
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtttttaatgaa 324  Q
    |||||||||||||||||  |||| |||||||| |  |||||||| |||||||||| | |||| |||| ||||||||||    
T  24924643 tatagaaattatgcattaaaaattggtgaaaagtataatgtttagctttatgaaagttaaaacgttgattttaatgaa 24924566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 15332827 - 15332887
Alignment:
Q  180 catgtcgcagtcaaccactccacatatgccaatgcacatctttaatcattaatatttttaa 240  Q
    |||||| |||||||||||| |||| |||||||| |||| |||| | |||||||||||||||    
T  15332827 catgtcccagtcaaccactacacacatgccaatacacaactttgaccattaatatttttaa 15332887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 26406028 - 26406088
Alignment:
Q  180 catgtcgcagtcaaccactccacatatgccaatgcacatctttaatcattaatatttttaa 240  Q
    ||||||||||||||||||| ||||||||| ||| |||| |||| | ||||||||| |||||    
T  26406028 catgtcgcagtcaaccactgcacatatgctaatacacaactttgaccattaatatatttaa 26406088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 315
Target Start/End: Original strand, 34809152 - 34809225
Alignment:
Q  242 actattatagaaattatgcattg-gaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    |||| |||||||| | ||||||| ||||| |||||||| | |||||||||||||||||||| ||||||| |||||    
T  34809152 actaatatagaaactttgcattgagaaat-ggtgaaaagtagaatgtttaactttatgaaagtcaaaaaattgtt 34809225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 25527642 - 25527582
Alignment:
Q  180 catgtcgcagtcaaccactccacatatgccaatgcacatctttaatcattaatatttttaa 240  Q
    ||||||||||| ||||||| |||| |||  |||||||| |||| ||| |||||||||||||    
T  25527642 catgtcgcagttaaccacttcacacatgttaatgcacaactttgatcgttaatatttttaa 25527582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 44562025 - 44561965
Alignment:
Q  180 catgtcgcagtcaaccactccacatatgccaatgcacatctttaatcattaatatttttaa 240  Q
    ||||||||||||||||||| |||| |||||||| |||| |||| | | ||||||| |||||    
T  44562025 catgtcgcagtcaaccacttcacacatgccaattcacaactttgaccgttaatatctttaa 44561965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 247 - 315
Target Start/End: Original strand, 37807251 - 37807319
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    |||||||||||||||||  |||| ||||||||||| ||||||||||||||||||| |||||||| ||||    
T  37807251 tatagaaattatgcattacaaattggtgaaaaatgaaatgtttaactttatgaaagtcaaaaaggtgtt 37807319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 315
Target Start/End: Complemental strand, 33839661 - 33839597
Alignment:
Q  249 tagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    |||||||||||||||| |||| ||||||||||| ||| ||||||||||  ||||| |||||||||||    
T  33839661 tagaaattatgcattgaaaattggtgaaaaatgaaatatttaacttta--aaaattaaaaagttgtt 33839597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 309
Target Start/End: Original strand, 37985152 - 37985223
Alignment:
Q  238 taagactattatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaa 309  Q
    ||||| || |||||||||||| ||||| |||| |||||||| || |||||| |||||||||||| |||||||    
T  37985152 taagattaatatagaaattatacattgaaaattggtgaaaagtgaaatgttaaactttatgaaagtcaaaaa 37985223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 11931906 - 11931846
Alignment:
Q  180 catgtcgcagtcaaccactccacatatgccaatgcacatctttaatcattaatatttttaa 240  Q
    ||||||||||||||||||| || | |||||||| |||| |||| | ||||||||| |||||    
T  11931906 catgtcgcagtcaaccactgcaaacatgccaatacacaactttgaccattaatatctttaa 11931846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 5302456 - 5302383
Alignment:
Q  254 attatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaa---gttgtttttaatgaa 324  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||| | |||||   |||||||||||||||    
T  5302456 attatgcattggaaatcggtgaaaaatgaaatatttaactttatgaaagttaaaaaattgttgtttttaatgaa 5302383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 251 - 315
Target Start/End: Original strand, 44107710 - 44107774
Alignment:
Q  251 gaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    ||||||||| ||||||||| |||||||| | ||||||||| |||||||||| |||||||||||||    
T  44107710 gaaattatgtattggaaattggtgaaaagtagaatgtttacctttatgaaagtcaaaaagttgtt 44107774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 27858797 - 27858723
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtttttaat 321  Q
    |||| ||||||||| ||| |||| |||||||| | |||||||||| ||||||||| ||||||| |||||||||||    
T  27858797 tataaaaattatgcgttgaaaattggtgaaaagttgaatgtttaagtttatgaaagtcaaaaaattgtttttaat 27858723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 25113813 - 25113879
Alignment:
Q  242 actattatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaa 309  Q
    |||| |||||||||| ||||| |||| | |||||||||| |||||||||||||||||||| |||||||    
T  25113813 actaatatagaaattttgcatgggaatt-ggtgaaaaatagaatgtttaactttatgaaagtcaaaaa 25113879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 14321124 - 14321056
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    |||||||||||||||||| |||| | |||||| |  ||||||||| ||||||||| | |||||||||||    
T  14321124 tatagaaattatgcattgaaaattgatgaaaagtaaaatgtttaattttatgaaagtaaaaaagttgtt 14321056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 315
Target Start/End: Original strand, 24084158 - 24084226
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    |||| |||||||| |||| |||| | | |||| |||||||||||||||||||||| ||||||| |||||    
T  24084158 tataaaaattatgtattgaaaattgataaaaagtggaatgtttaactttatgaaagtcaaaaaattgtt 24084226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 35838423 - 35838356
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    |||| ||||||||||||| |||| |||||||| | ||||| |||||||||||||| ||||||| |||||    
T  35838423 tataaaaattatgcattgaaaattggtgaaaagtagaatg-ttaactttatgaaagtcaaaaaattgtt 35838356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 4302348 - 4302296
Alignment:
Q  188 agtcaaccactccacatatgccaatgcacatctttaatcattaatatttttaa 240  Q
    ||||||| ||| ||||||||||||||||||  ||||||| ||||||| |||||    
T  4302348 agtcaactacttcacatatgccaatgcacaattttaatcgttaatatctttaa 4302296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 15646142 - 15646186
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaa 291  Q
    |||||||||||||||||| |||| | |||||| ||||||||||||    
T  15646142 tatagaaattatgcattgaaaattgatgaaaagtggaatgtttaa 15646186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 33776702 - 33776746
Alignment:
Q  265 gaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaa 309  Q
    ||||| |||||| | |||||||||||||||||||||| |||||||    
T  33776702 gaaattggtgaatagtggaatgtttaactttatgaaagtcaaaaa 33776746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 242 - 324
Target Start/End: Original strand, 24613196 - 24613278
Alignment:
Q  242 actattatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtttttaatgaa 324  Q
    |||| |||||||||| |||||||  |||  ||||||| | ||||||| |||||||||||| ||||||||||||||||||||||    
T  24613196 actaatatagaaattttgcattgagaattagtgaaaagtagaatgttcaactttatgaaagtcaaaaagttgtttttaatgaa 24613278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 247 - 315
Target Start/End: Original strand, 47639505 - 47639573
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    |||||||||||| ||||| |||| | ||||||||| ||||||||||||||| ||| |||||||||||||    
T  47639505 tatagaaattattcattgaaaattgatgaaaaatgaaatgtttaactttataaaagtcaaaaagttgtt 47639573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 310
Target Start/End: Original strand, 28749930 - 28749993
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaag 310  Q
    ||||||||||||||||||||||| | |||||| | |||||||||||||||||||| | ||||||    
T  28749930 tatagaaattatgcattggaaattgatgaaaagtagaatgtttaactttatgaaagtaaaaaag 28749993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 315
Target Start/End: Original strand, 10980666 - 10980734
Alignment:
Q  247 tatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaaatcaaaaagttgtt 315  Q
    |||| |||||||| |||| ||||  ||||||| | |||||||||||||||| ||| | |||||||||||    
T  10980666 tatataaattatgtattgaaaattagtgaaaagtagaatgtttaactttataaaagttaaaaagttgtt 10980734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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