View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_79 (Length: 339)
Name: NF9361A_low_79
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 6236342 - 6236647
Alignment:
| Q |
11 |
atatcatggtgtttctaaattatagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattg |
110 |
Q |
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| T |
6236342 |
atatcatggtgtttctaaattttagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattg |
6236441 |
T |
|
| Q |
111 |
aaaacctaggtgataggtgaaaatctaannnnnnnnnnnnnngatcaagcgaagaaattcaataaaactagagagggccagaacccataacaaggtctac |
210 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
6236442 |
aaaacctaggtgataggtgaaaatctaattttttttttttt--atcaagcgaagaaattcaataaaactgaagagggccagaacccataacaaagtctac |
6236539 |
T |
|
| Q |
211 |
atcaggaagaaacaaaaacagaaaaggcagaattacatcaaaatcctataataaggaagtcctgaaccctctctagagagaaaagaagcaataaagctgg |
310 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6236540 |
atcaggaagaaacaaaaatagaaaaggcagaattacatcaaaatcctataataaggaagtcctgaaccctctctagagagaaaagaagcaataaagcagg |
6236639 |
T |
|
| Q |
311 |
gtggtgag |
318 |
Q |
| |
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|||||||| |
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| T |
6236640 |
gtggtgag |
6236647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 138
Target Start/End: Complemental strand, 33891908 - 33891807
Alignment:
| Q |
33 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaa |
132 |
Q |
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| T |
33891908 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaa |
33891813 |
T |
|
| Q |
133 |
atctaa |
138 |
Q |
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|||||| |
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| T |
33891812 |
atctaa |
33891807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 138
Target Start/End: Original strand, 33952340 - 33952441
Alignment:
| Q |
33 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaattgaaaacctaggtgataggtgaaa |
132 |
Q |
| |
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|||||| ||||||||||||||||||| |||||||| ||||||||||||||| |||| ||||||||| |||||||||||||| | || ||||||| |
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| T |
33952340 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta----taattgaaaacctagtttatgggtgaaa |
33952435 |
T |
|
| Q |
133 |
atctaa |
138 |
Q |
| |
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|||||| |
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|
| T |
33952436 |
atctaa |
33952441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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