View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_80 (Length: 337)
Name: NF9361A_low_80
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_80 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 25 - 331
Target Start/End: Original strand, 40584109 - 40584414
Alignment:
| Q |
25 |
aattcttttttaatccattttcacttttcaagacatcgaagatgatactctaggatgtggcggagaggggctacaaccgtagcaaaaatatgcaccaaat |
124 |
Q |
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| T |
40584109 |
aattcttttttaatccattttcacttttcaagacatcgaagatgatactctaggatgtggcggagaggggctacaaccgtagcaaaaatatacaccaaat |
40584208 |
T |
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| Q |
125 |
gagtgtgatcgagaagaagagtagttttgaattagaaggatccactcttttctacgtttatgtaaaaatcggagaattaacttttttcaaatacacatga |
224 |
Q |
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| T |
40584209 |
gagtgtgattgagaagaagagtagttttgaattagaaggatccactcttttctacgtttatgt-aaaatcggagaattaacttttttcaaatacacatga |
40584307 |
T |
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| Q |
225 |
acaattagttgagagttggggttagattgaagtagaatggtaaatgaaaaattggtatttgcatggatgagaaatcggtatttgagagaggtcaagtcta |
324 |
Q |
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| T |
40584308 |
acaattagttgagagttggggttagattgaagtagaatggtaaatgaaaaattggtatttgcatggctgagaaatcggtatttgagagaggtcaagtcta |
40584407 |
T |
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| Q |
325 |
ttattga |
331 |
Q |
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| T |
40584408 |
ttattga |
40584414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 217 - 300
Target Start/End: Complemental strand, 3910767 - 3910683
Alignment:
| Q |
217 |
acacatgaacaatta-gttgagagttggggttagattgaagtagaatggtaaatgaaaaattggtatttgcatggatgagaaatc |
300 |
Q |
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| T |
3910767 |
acacatgaacaattaagttgagaatagcggttggattgaagtagaatggtgaagggaaatttggtatttgcatggtttagaaatc |
3910683 |
T |
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