View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_86 (Length: 334)
Name: NF9361A_low_86
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_86 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 337238 - 336929
Alignment:
| Q |
19 |
acatcaaaagcaaatgtagaaatgaaatactagtgtccatacatgcagatccagttaacatatattattagagtagatcagaattcagaagggatacctt |
118 |
Q |
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| T |
337238 |
acatcaaaagcaaatgtagaaatgaaatactagtgtccatacatgcagatccagttaacatatattattagagtagatcagaattcagaagggatacctt |
337139 |
T |
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| Q |
119 |
atcttttacattcccgaggacaattctataaggagcaattccaggaagatgagggagttttggctccaaaagcttctgaaaactggatcttcctatttgg |
218 |
Q |
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| T |
337138 |
atcttttacattcccaaggacaattctataaggagcaattccaggaagatgagggagttttggctccaaaagcttctgaaaactggatcttcctatttgg |
337039 |
T |
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| Q |
219 |
gattctgcaaacaatttcctttgagcaagaagttgttgattagagttggaagaaggagatcgtggaatgctcgctgcacttgttggggatgcatgactat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
337038 |
gattctgcaaacaatttcctttgagcaagaagttgttgattagagttggaagaaggagatcgtggaatgctcgctgcacttgttggagatgcatgactat |
336939 |
T |
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| Q |
319 |
tggaacttcc |
328 |
Q |
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| T |
336938 |
tggaacttcc |
336929 |
T |
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Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 42172600 - 42172507
Alignment:
| Q |
112 |
ataccttatcttttacattcccgaggacaattctataaggagcaattccaggaagatgagggagttttggctccaaaagcttctgaaaactgga |
205 |
Q |
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|||||||||| |||||||| || ||||||| |||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||||||| |
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| T |
42172600 |
ataccttatcctttacatttcccaggacaactctataaggagcaattccaggaagttgagggagctgtggctccaaaagtttctgaaaactgga |
42172507 |
T |
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