View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_89 (Length: 330)
Name: NF9361A_low_89
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_89 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 5 - 324
Target Start/End: Original strand, 42941642 - 42941958
Alignment:
| Q |
5 |
gttcagattgagactgctgttagggaccgtttggcagccgatgacaaatatgaggatgaagaagaagaagctttggaaaaagtaattgaatttttccagt |
104 |
Q |
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| T |
42941642 |
gttcagattgagactgctgttagggaccgtttggcagccgatgacaaatatgaggatgaagaagaagaagctttggaaaaagtaattgaatttttccagt |
42941741 |
T |
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| Q |
105 |
ctaagtacttcaagaaacattcagtcatcacatatcatttcccagcaaactctccaactgctgaggtaaaataatagcaagcagcattaggcattggcta |
204 |
Q |
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| T |
42941742 |
ctaagtacttcaagaaacattcagtcatcacatatcatttcccagcaaactctccaactgctgaggtaa---agtagcaagcagcattaggcactggcta |
42941838 |
T |
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| Q |
205 |
ccttaattgatcctattcattttaggttgattttaggtcaacttattattaacaacaatgacattaatcgtcatgtcatttacagctgctacatatgagt |
304 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42941839 |
ccttaattgatcctattcattttaagttgattttaggtcaacttattattaacaacaatgacattaatcgtcatgtcatttacaactgctacatatgagt |
42941938 |
T |
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| Q |
305 |
tttgaatttcatctggttac |
324 |
Q |
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||||||||||||| |||||| |
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| T |
42941939 |
tttgaatttcatccggttac |
42941958 |
T |
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