View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_9 (Length: 484)
Name: NF9361A_low_9
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 42686266 - 42685795
Alignment:
| Q |
1 |
agaggaactcacttgtccagcagcagaggcatggtttgtgttaagaatagcatgtacttcagcatgacaaacataactagaataggaagaacagaaaaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42686266 |
agaggaactcacttgtccagcagcagaggcatggtttgtgttaagaatagcatttacttcagcatgacaaacataactagaataggaagaacagaaaaac |
42686167 |
T |
|
| Q |
101 |
cattatcaaagtcatcctgattaattaaaagacttgagcgagaacatgattaaggttacaacaagagtgaaatatgatttgaaaacactcacgggtactt |
200 |
Q |
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| T |
42686166 |
cattatcaaagtcatccttattaatgaaaagacttgagcgagaacatgattaaggttacaacaagagtgaaatatgatttgaaaacactcacgggtactt |
42686067 |
T |
|
| Q |
201 |
ggtctccaaaggattcccggtcctagatttctgaaacatataaatagatttatcaatcaatgagaaattttaaatgatagcaaaagaaaaataactcaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42686066 |
ggtctccaaaggattcccggtcctagatttctgaaacatataaatagatttatcaatcaatgagaaattttaaatgatagcaaaagaaaaataactcaaa |
42685967 |
T |
|
| Q |
301 |
ctcctgccttaaacacttaacttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataaccaatgcctgccacagaaggnnnnnnnn |
400 |
Q |
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| T |
42685966 |
ctcctgccttaaacacttaccttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataaccaatgcctgccacagaaggaaaaaaaa |
42685867 |
T |
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| Q |
401 |
ncaaggcataaaacatgtgtttcacaaaaataaatagattggataagagtacagaataaacttaccgagaat |
472 |
Q |
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| T |
42685866 |
acaaggcataaaacatgtgtttcacaaaaataaatagattggataagagtacagaataaacttaccgagaat |
42685795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 380
Target Start/End: Complemental strand, 21185787 - 21185728
Alignment:
| Q |
321 |
cttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataaccaatgcc |
380 |
Q |
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| T |
21185787 |
cttggcccatggtaacttgtcatcagaacaacctcttggaaattcattataaccaatgcc |
21185728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 321 - 380
Target Start/End: Complemental strand, 27119385 - 27119326
Alignment:
| Q |
321 |
cttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataaccaatgcc |
380 |
Q |
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| T |
27119385 |
cttggcccatggtaacttgtcatcagaacaacctcttggaaattcattataaccaatgcc |
27119326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 27119485 - 27119424
Alignment:
| Q |
14 |
tgtccagcagcagaggcatggtttgtgttaagaatagcatgtacttcagcatgacaaacataa |
76 |
Q |
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| T |
27119485 |
tgtccagca-cagatgcatggtttgtgttaagaatagcatttacttcagcatgacaaacataa |
27119424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 21185887 - 21185826
Alignment:
| Q |
14 |
tgtccagcagcagaggcatggtttgtgttaagaatagcatgtacttcagcatgacaaacataa |
76 |
Q |
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||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
21185887 |
tgtccagca-cagatgcatggtttgtgttaagaatagcatttacttcagcatgacagacataa |
21185826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 27119423 - 27119384
Alignment:
| Q |
193 |
gggtacttggtctccaaaggattcccggtcctagatttct |
232 |
Q |
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| T |
27119423 |
gggtacttagtctccaaaggattcccagtcctagatttct |
27119384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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