View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9361A_low_95 (Length: 324)

Name: NF9361A_low_95
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9361A_low_95
NF9361A_low_95
[»] chr4 (1 HSPs)
chr4 (32-318)||(45677987-45678273)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 32 - 318
Target Start/End: Complemental strand, 45678273 - 45677987
Alignment:
Q  32 ttatataaaatgaacaaaaataatttattcgcatcaatt---aatatttttaatgttgtgtacgcgctcaaatatttttatttaagtttatgtctcttta 128  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45678273 ttatataaaatgaacaaaaataatttattcgcatcaatttataatatttttaatgttgtgtacgcgctcaaatatttttatttaagtgtatgtctcttta 45678174  T
Q  129 tttctcacggacaaaggtggattccctatcatgatggggcaaaaattcaagtacgtggctaaagtccgtttgtctctttattaaaaagaacaaataatta 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45678173 tttctcacggacaaaggtggattccctatcatgatggggcaaaaaatcaagtacgtggctaaagtccgtttgtctctttattaaaaagaacaaataatta 45678074  T
Q  229 caca-tttattcctttgactagaaagataatttggaaaagggtgaatatagacttagaaccttactcctagctatgatattagcatatatg 318  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  45678073 cacattttattcctttgactagaaagataatttggaaaagggtgaatatagacttagaaccttactc----ctatgatattagcatatatg 45677987  T

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