View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9361A_low_97 (Length: 320)
Name: NF9361A_low_97
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_97 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 5 - 299
Target Start/End: Complemental strand, 7278922 - 7278625
Alignment:
| Q |
5 |
ccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtgg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7278922 |
ccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtgg |
7278823 |
T |
|
| Q |
105 |
taataaaattgaagctttggtgaatgaggatggcgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatg |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7278822 |
taataaaattgaagctttggtgaatgaggatggtgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatg |
7278723 |
T |
|
| Q |
205 |
ggacctttgatgaatgaggatggtagcgagggtaaatgtgtgaa---agaatataattttttgatgaaggaggggggtggtgaagatgaggaaggtga |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7278722 |
ggacctttgatgaatgaggatggtagcgagggtaaatgtgtgaaagaagaagatcattttttgatgaaggaggggggtggtgaagatgaggaaggtga |
7278625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 5 - 299
Target Start/End: Original strand, 7374917 - 7375214
Alignment:
| Q |
5 |
ccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtgg |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7374917 |
ccacagaggaagttgaaggcggtgaaggtaagtgtgttgaggttgaagagaattgtttggagaaggaagaggtggggtgtgaagaggagaatgagggtgg |
7375016 |
T |
|
| Q |
105 |
taataaaattgaagctttggtgaatgaggatggcgaggtgaattgtatggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaaatg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7375017 |
taataaaattgaagctttggtgaatgaggatggcgaggtgaattgtatggagaaagaagagagggggtatgaagagaagaatgagggaggtgaaaaaatg |
7375116 |
T |
|
| Q |
205 |
ggacctttgatgaatgaggatggtagcgagggtaaatgtgtga---aagaatataattttttgatgaaggaggggggtggtgaagatgaggaaggtga |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7375117 |
ggacctttgatgaatgaggatggtagcgagggtaaatgtgtgaaagaagaagatcattttttgatgaaggaggggggtggtgaagatgaggaaggtga |
7375214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 201
Target Start/End: Complemental strand, 7278593 - 7278543
Alignment:
| Q |
151 |
atggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaa |
201 |
Q |
| |
|
|||||| ||||||| ||||||||| | ||| |||||||||||||||||||| |
|
|
| T |
7278593 |
atggaggaagaagatagggggtgtaaggaggagaatgagggaggtgaaaaa |
7278543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 201
Target Start/End: Original strand, 7375246 - 7375296
Alignment:
| Q |
151 |
atggagaaagaagagagggggtgtgaagagaagaatgagggaggtgaaaaa |
201 |
Q |
| |
|
|||||| ||||||| ||||||||| | ||| |||||||||||||||||||| |
|
|
| T |
7375246 |
atggaggaagaagatagggggtgtaaggaggagaatgagggaggtgaaaaa |
7375296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 7278576 - 7278520
Alignment:
| Q |
78 |
ggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgagga |
134 |
Q |
| |
|
||||||| | |||||||||||||| ||| | ||| |||||||||||| ||||||||| |
|
|
| T |
7278576 |
ggggtgtaaggaggagaatgagggaggtgaaaaatttgaagctttggggaatgagga |
7278520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 7375263 - 7375319
Alignment:
| Q |
78 |
ggggtgtgaagaggagaatgagggtggtaataaaattgaagctttggtgaatgagga |
134 |
Q |
| |
|
||||||| | |||||||||||||| ||| | ||| |||||||||||| ||||||||| |
|
|
| T |
7375263 |
ggggtgtaaggaggagaatgagggaggtgaaaaatttgaagctttggggaatgagga |
7375319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University