View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361A_low_99 (Length: 316)
Name: NF9361A_low_99
Description: NF9361A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361A_low_99 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 3099590 - 3099278
Alignment:
| Q |
8 |
ttggtgttgctggtattgatatcagctctgtctctggtctctcctccatcactaactaaaatcacctgatccnnnnnnntataatcaaatttttagattt |
107 |
Q |
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| T |
3099590 |
ttggtgttgctggtattgatatcagctctgtctctggtctctcctccatcactaactaaaatcacctgatccaaaaaaatataatcaaatttttagattt |
3099491 |
T |
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| Q |
108 |
cattagcgaaactaaatgcatgattgatatca---------cgttagaccgtggttttgcaaaaactacataatatctaacttttacataatcacgatgg |
198 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3099490 |
cattagcgaaactaaatgcatgattgatattagagtggatacgttagaccgtggttttgcaaaaactacataatatctaacttttacaaaatcacgatgg |
3099391 |
T |
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| Q |
199 |
ttcgtcgtgattttgaaacatgtcgtgatatgtacaaataaaaaagacacttgaaaatgaaagcaaataccttggaatatagcaagcaaagtaacaaggg |
298 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3099390 |
ttcgtcgtgattttgaaacatgtcgtgatatatacaaataaaaaagacacttgaaaatgaaagcaaataccttggaatatagcaagcaaagtaacaa-gg |
3099292 |
T |
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| Q |
299 |
ttggcatgagaagg |
312 |
Q |
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|||| ||||||||| |
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| T |
3099291 |
ttggaatgagaagg |
3099278 |
T |
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