View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9361_high_1 (Length: 591)
Name: NF9361_high_1
Description: NF9361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 540; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 11 - 578
Target Start/End: Complemental strand, 44886118 - 44885552
Alignment:
| Q |
11 |
tattctagtcagtctttccaatgcataaatgttgatgggaatagccaaatacatccaagtctacaaaacacatacaatcctaatttagaacataaaagaa |
110 |
Q |
| |
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||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
44886118 |
tattctagtcagtctttccaatgcataaatggtgacgggaatagccaaatacatccaagtctacaaaacacatacaatcctaattaa-aacataaaagaa |
44886020 |
T |
|
| Q |
111 |
ttagctgagaaactacattaaaaggaaaaagtttaattgaagaaaggtgctaaccgttttcttgtaccattccttggtaaagtaaagtttgaatccatgc |
210 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44886019 |
ttagctgagaaactacataaaaaggaaaaagtttaattgaagaaaggtgctaaccgttttcttgtaccattccttggtaaagtaaagtttgaatccatgc |
44885920 |
T |
|
| Q |
211 |
acaatcaaaagtgcatagacaaatacaaagagatgatgagtgtaccaaaagacattgaaaccagttacactattgaggaggggttggaggcaattgggtg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44885919 |
acaatcaaaagtgcatagacaaatacaaagagatgatgagtgtaccaaaagacattgaaaccagttacactattgaggaggggttggaggcaattgggtg |
44885820 |
T |
|
| Q |
311 |
ttttgggttcttcgacctttcttttccttaaccaaggactagccgtcatgaaggctattgccattaaaacaaccattataatccctgttactccttccca |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44885819 |
ttttgggttcttcgacctttcttttccttaaccaaggactagccgtcgtgaaggctattgccattaaaacaaccattataatccctgttactccttccca |
44885720 |
T |
|
| Q |
411 |
tgatttcacaaaatgccaataatttgttgcttgctttccaaaaaatggttccatgagcttgtacttttcactatttgcatgaagaaggcgtggaaagtcg |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44885719 |
tgatttcacaaaatgccaataatttgttgcttgctttccaaaaaatggttccatgagcttgtacttttcactatttgcatgaagaaggcgtggaaagtcg |
44885620 |
T |
|
| Q |
511 |
caagcaagatgataaatagcatgtataccaactccaattgctactgccacagctattacctgcaaatt |
578 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44885619 |
caagcaagatgataaatagcatgtataccaactccaattgctactgccacagctattacctgcaaatt |
44885552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 314 - 576
Target Start/End: Complemental strand, 44899200 - 44898938
Alignment:
| Q |
314 |
tgggttcttcgacctttcttttccttaaccaaggactagccgtcatgaaggctattgccattaaaacaaccattataatccctgttactccttcccatga |
413 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44899200 |
tgggttctccaacctttcttttccttaaccaaggactagccaacgtgaaggcaattgtcattaaaacaaccattataatccctgttactccttcccatga |
44899101 |
T |
|
| Q |
414 |
tttcacaaaatgccaataatttgttgcttgctttccaaaaaatggttccatgagcttgtacttttcactatttgcatgaagaaggcgtggaaagtcgcaa |
513 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| ||| | |||||||| ||| |
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| T |
44899100 |
tttcacaaaatgccaataacttgttgcttgctttccaaaaaatggttccatgagctcgtacttttcactattcgcgtgaataagactaggaaagtcacaa |
44899001 |
T |
|
| Q |
514 |
gcaagatgataaatagcatgtataccaactccaattgctactgccacagctattacctgcaaa |
576 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||| |
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|
| T |
44899000 |
gcaagatgataaatagcatgtataccaactccaattgctattgcaacagctattatctgcaaa |
44898938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 332
Target Start/End: Complemental strand, 44899533 - 44899218
Alignment:
| Q |
20 |
cagtctttccaatgcataaatgttgatgggaatagccaaatacatccaagtctacaaaacacatacaatcctaat--ttagaacataaaagaattagctg |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | ||||||| | ||| || || |||||||||||| |
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| T |
44899533 |
cagtctttccaatgcataaatgatgatgggaatagccaaatacatccaagtctaccaaagagatacaataaagttccttaaaatgtacaagaattagctg |
44899434 |
T |
|
| Q |
118 |
agaaactacattaaaagg----aaaaagtttaattgaagaaaggtgctaaccgttttcttgtaccattccttggtaaagtaaagtttgaatccatgcaca |
213 |
Q |
| |
|
|||||||| ||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44899433 |
agaaactagattaaaagggaaaaaaaaggttaattgaaggaaggtgctaaccgttttcttgtaccattccttagtaaagtaaagtttgaatccatgcaca |
44899334 |
T |
|
| Q |
214 |
atcaaaagtgcatagacaaatacaaagagatgatgagtgtaccaaaagacattgaaaccagttacactattgaggaggggttggaggcaattgggtgttt |
313 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| | |||||||||||||||||||||||||| |
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| T |
44899333 |
atcaaaagggcatagacaaatacaaagagatgatgagagtaccaaaaggcattgaaaccagtta---tattaatgaggggttggaggcaattgggtgttt |
44899237 |
T |
|
| Q |
314 |
tgggttcttcgacctttct |
332 |
Q |
| |
|
||||||||||| ||||||| |
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| T |
44899236 |
tgggttcttcgtcctttct |
44899218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 333 - 575
Target Start/End: Complemental strand, 44915436 - 44915194
Alignment:
| Q |
333 |
tttccttaaccaaggactagccgtcatgaaggctattgccattaaaacaaccattataatccctgttactccttcccatgatttcacaaaatgccaataa |
432 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44915436 |
tttcctgaaccaaggactagccagtgtgaaggctattgtcattaaaacaaccattacaatccccgttactccttcccatgatttcacaaaatgccaataa |
44915337 |
T |
|
| Q |
433 |
tttgttgcttgctttccaaaaaatggttccatgagcttgtacttttcactatttgcatgaagaaggcgtggaaagtcgcaagcaagatgataaatagcat |
532 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
44915336 |
cttgttggttgctttccaaaaaatggttccatgagcttgtacttttcactatttgcatgaagaaggcgaggaaagtcgcaagtaagatgataaatagcat |
44915237 |
T |
|
| Q |
533 |
gtataccaactccaattgctactgccacagctattacctgcaa |
575 |
Q |
| |
|
|||||||||||||| |||||||||||||||| || |||||||| |
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| T |
44915236 |
gtataccaactccagttgctactgccacagcaatcacctgcaa |
44915194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 14 - 288
Target Start/End: Complemental strand, 44915723 - 44915460
Alignment:
| Q |
14 |
tctagtcagtctttccaatgcataaatgttgatgggaatagccaaatacatccaagtctacaaaacacatacaatcctaatttagaacataaaagaatta |
113 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |
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|
| T |
44915723 |
tctagtcagtcgttccaatgcataaatgatgatgggaataaccaaatacatccaagtctacaaaacacatacaatcct----tagaatatacaagaatta |
44915628 |
T |
|
| Q |
114 |
gctgagaaactacattaaaaggaaaaagtttaattgaagaaaggtgctaaccgttttcttgtaccattccttggtaaagtaaagtttgaatccatgcaca |
213 |
Q |
| |
|
||||||||||| || ||||||| ||||| ||| ||||||||||||||||| |||| ||||||| || ||||||||||||| |||||||||| |
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|
| T |
44915627 |
gctgagaaactggataaaaagga-------taattcaaggaaggtgctaaccgtttttttgtgccattcccgagtcaagtaaagtttgattccatgcaca |
44915535 |
T |
|
| Q |
214 |
atcaaaagtgcatagacaaatacaaagagatgatgagtgtaccaaaagacattgaaaccagttacactattgagg |
288 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| |
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|
| T |
44915534 |
accaaaagggcatagacaaatacaaagagatgatgagagtaccaaaaggcattgaaaccagttagactattgagg |
44915460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 361 - 576
Target Start/End: Complemental strand, 39983050 - 39982835
Alignment:
| Q |
361 |
aaggctattgccattaaaacaaccattataatccctgttactccttcccatgatttcacaaaatgccaataatttgttgcttgctttccaaaaaatggtt |
460 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| |||||||| |||||||| ||||| ||||||||||| |||||||||| || || ||| ||||| || | |
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|
| T |
39983050 |
aaggctattgccattagcacaaccattagaattcctgttaccccttcccaagatttgacaaaatgccagtaatttgttggtttctctccgaaaaaaggct |
39982951 |
T |
|
| Q |
461 |
ccatgagcttgtacttttcactatttgcatgaagaaggcgtggaaagtcgcaagcaagatgataaatagcatgtataccaactccaattgctactgccac |
560 |
Q |
| |
|
| || ||||||||||||||| | |||||||||||| ||| ||||| || |||||||||||||||||||||||||||||||| |||||||||| ||||| |
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|
| T |
39982950 |
caatcagcttgtacttttcattgcttgcatgaagaatgcgaggaaaatcacaagcaagatgataaatagcatgtataccaacaccaattgctattgccag |
39982851 |
T |
|
| Q |
561 |
agctattacctgcaaa |
576 |
Q |
| |
|
|||||| | ||||||| |
|
|
| T |
39982850 |
agctatcatctgcaaa |
39982835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 39983382 - 39983319
Alignment:
| Q |
21 |
agtctttccaatgcataaatgttgatgggaatagccaaatacatccaagtctacaaaacacata |
84 |
Q |
| |
|
||||| |||||| |||||||| ||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
39983382 |
agtctctccaatccataaatggtgatgggaatagccagatacatccaagtctacaaagcacata |
39983319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 272
Target Start/End: Complemental strand, 39983236 - 39983118
Alignment:
| Q |
154 |
aaggtgctaaccgttttcttgtaccattccttggtaaagtaaagtttgaatccatgcacaatcaaaagtgcatagacaaatacaaagagatgatgagtgt |
253 |
Q |
| |
|
||||| ||||||||||| | || ||||||||| || |||||||||||| |||||| | |||||| | ||||| |||| | ||||| ||||||| | |
|
|
| T |
39983236 |
aaggtcctaaccgttttatggttccattccttagtcaagtaaagtttggttccatggataatcaacatggcatacacaatgatgaagaggtgatgagaat |
39983137 |
T |
|
| Q |
254 |
accaaaagacattgaaacc |
272 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
39983136 |
accaaaaggcattgaaacc |
39983118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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