View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361_high_6 (Length: 314)
Name: NF9361_high_6
Description: NF9361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 7 - 301
Target Start/End: Complemental strand, 3790108 - 3789812
Alignment:
| Q |
7 |
tatacatatgacttgtaatattgtaaaccttaactcactcaagtagtatatcaaactactgctactctttagtcgcagtggtaggcatacacgtggctga |
106 |
Q |
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| T |
3790108 |
tatacatatgacttgtaatattgtaaaccttaactcactcaagtagtatatcgaactactgctactctttagtcgcagtggtaggcatacacgtggctga |
3790009 |
T |
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| Q |
107 |
attgcataaacaattgatcatgttccattgtttgtgatatatgtttctatactcttttgttactaatttccgatataacataatttcgagctgaggttga |
206 |
Q |
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| T |
3790008 |
attgcataaagaattgatcatgttccattgtttgtgatatatgtttctatactcttttgttactaatttctgatgtaacataatttcgagcttaggttga |
3789909 |
T |
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| Q |
207 |
gattaac--atagaatacttcatgatctccttttcgcattgtaggaaatcccaccaaaaaacaagaaattcaaatctcccctgatatacctatgatg |
301 |
Q |
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| T |
3789908 |
gattaacatatagaatacttcatgatctccttttcgcattgtaggaaatcccaccaaaaaacaagaaattcaaatctcccctgatatacctatgatg |
3789812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 127 - 301
Target Start/End: Original strand, 3800118 - 3800292
Alignment:
| Q |
127 |
tgttccattgtttgtgatatatgtttctatactcttttgttactaatttccgatataacataatttcgagctgaggttgagattaacatagaatacttca |
226 |
Q |
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|||| |||||||| |||| | ||| ||| || ||||||||||||| || || ||||||||||||||||| ||||||| | ||||| |||| |||| |
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| T |
3800118 |
tgtttcattgtttatgatttctgtctctttaatcttttgttactagttgttgaggtaacataatttcgagctttggttgagttcaacatcaaatatttca |
3800217 |
T |
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| Q |
227 |
tgatctccttttcgcattgtaggaaatcccaccaaaaaacaagaaattcaaatctcccctgatatacctatgatg |
301 |
Q |
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| T |
3800218 |
tgatctcgttttggcattgcaggaaatccaaccaaaaaacaagaaattcaaatctccccggatatacctatgatg |
3800292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 8808245 - 8808196
Alignment:
| Q |
7 |
tatacatatgacttgtaatattgtaaaccttaactcactcaagtagtata |
56 |
Q |
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|||| ||||||||||||| | |||||||| ||||||||||||||| |||| |
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| T |
8808245 |
tatatatatgacttgtaacaatgtaaaccctaactcactcaagtaatata |
8808196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 34940211 - 34940260
Alignment:
| Q |
1 |
tagtactatacatatgacttgtaatattgtaaaccttaactcactcaagt |
50 |
Q |
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|||||||||| ||||| ||||||| ||||||||||||| |||||||||| |
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| T |
34940211 |
tagtactatatatatggcttgtaactttgtaaaccttaattcactcaagt |
34940260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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