View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361_low_1 (Length: 643)
Name: NF9361_low_1
Description: NF9361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 17 - 631
Target Start/End: Complemental strand, 32645503 - 32644892
Alignment:
| Q |
17 |
ctcataaccatcaaactgctggagctctttatatactaatgggctgtgtggctttatcttctttctacattttgcaggtaaactaacgacccagtagttc |
116 |
Q |
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| T |
32645503 |
ctcataaccatcaaactgctggagctctttatatactgatgggctgtgtggctttatcttctttctacattttgcaggtaaactaacgacccagtagttc |
32645404 |
T |
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| Q |
117 |
gaccaataatttactgacctagtacttgatcgagcagaccaaggatccaattcttaaaacacttaactaattaattaaagtatacgaccatgatgtttgg |
216 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32645403 |
gaccaatgatttactgacctagtacttgatcgagcagaccaaggatccaattcttaaaacacttaactaattaattaaagtatacgaccatgatgtttgg |
32645304 |
T |
|
| Q |
217 |
tgtcatatgtggattattatttctaaattgtttgtgggaattttaatgcagtcgataacggtaaaaagatatccagctgagctctcattggcaaccttga |
316 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32645303 |
tgtcatatgtggattattatttctaaattgtttgttggaattttaatgcagtcgataacggtaaaaagatatccagctgagctatcattggcaaccttga |
32645204 |
T |
|
| Q |
317 |
tatgtttcgtgggaggagcacaagcaactgcggtggcacttgtggccgaacgtcattcacatgcttgggccattggctgggattataggctctatgctcc |
416 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32645203 |
tatgtctcgcgggaggagcacaagcaactgcggtggcacttgtggccgaacgtcattcacatgcttgggccattggctgggattataggctctatgctcc |
32645104 |
T |
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| Q |
417 |
tctttacacggtttgttaatccgttaattagtttctcattcacaagcttagttagnnnnnnnttcaaataattttcttaatcagtttcttaatttattat |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
32645103 |
tctttacacggtttgttaatccgttaattagtttctcattcacaagcttagttagaaaaaaattcaaataattttcttaatcagtttcttaat---ttat |
32645007 |
T |
|
| Q |
517 |
atagggaatagttagttcaggaattgcatactatgttcaagggctggtgatgcaaatgagaggcccagtttttgcaacagcttttaatcctctttgcatg |
616 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32645006 |
atagggaatagttagttcaggaattgcatactatgttcaagggctggtgatgcaaatgagaggcccagtttttgcaacagcttttaatcctctttgcatg |
32644907 |
T |
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| Q |
617 |
atcatcgttgcttgt |
631 |
Q |
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||||||||||||||| |
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| T |
32644906 |
atcatcgttgcttgt |
32644892 |
T |
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