View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361_low_11 (Length: 345)
Name: NF9361_low_11
Description: NF9361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 4179640 - 4179313
Alignment:
| Q |
18 |
gatctaggtttgatatatgctacctcaacatgaacatcatttaccaaaaattaaataaaataaatatgtgaatatatttgcctgaacataaaagagggga |
117 |
Q |
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| T |
4179640 |
gatctaggtttgatatatgctacctcaacatgaacatcatttaccaaaaattaaataaaataaatatgtgaatatatttgcctgaacataaaagagggga |
4179541 |
T |
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| Q |
118 |
gagaacagaggaaattggccatcaatttcattccagaaaacaaggtgagcctcatgatcatcatcgtgttcatttttattcgactcaaggaactcagata |
217 |
Q |
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| T |
4179540 |
gagaacagaggaaattggccatcaatttcattccagaaaacaaggcgagcctcatgatcatcatcgtgttcatttttattcgactcaaggaactcagata |
4179441 |
T |
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| Q |
218 |
agcttgtagggtaatgagcctctaatagtcgaattccagaatcattagacacaatttccaatcctgttatgtcccttttttggactcgaccagctagtag |
317 |
Q |
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| T |
4179440 |
agcttgtagggtaatgagcctctaagagtcgaattccagaatcattagacacaatttccaatcctgttatgtcccttttttggactcgaccagccagtag |
4179341 |
T |
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| Q |
318 |
aggatgatccaataaggccctagcaagt |
345 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
4179340 |
aggatgatccaataaggccctagcaagt |
4179313 |
T |
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