View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9361_low_14 (Length: 344)
Name: NF9361_low_14
Description: NF9361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361_low_14 |
 | |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 26678506 - 26678308
Alignment:
| Q |
7 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtttgc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26678506 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgccaggccccgttcctttgtgcgggcattagttgatttttgtttgt |
26678407 |
T |
|
| Q |
107 |
tctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgatttct |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
26678406 |
tctatctgaacttgtttgtaacttttgggcggtcttcaatggtacaccttgtgccgtgaagattggctgtcgtttttattatatttcattttgatttct |
26678308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 10290517 - 10290716
Alignment:
| Q |
7 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtttgc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10290517 |
tttggtggtttaaggctaaatttactgtatttccttattgtttttatgattggtgccagaccctgttcctttgtgcgggcattggttgatttttgattgc |
10290616 |
T |
|
| Q |
107 |
tctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgatttctt |
206 |
Q |
| |
|
||| | ||||||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
10290617 |
tctgtttgaacttgtttgtaatttttgagcggtcttcaatggtacaccttgtgccgtgaagattggttgtcgtttatattatatttcattttgatttctt |
10290716 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 31759399 - 31759200
Alignment:
| Q |
7 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtttgc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
31759399 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgccaggccccgttcctttgtgcgggcattggttgatttttgattgc |
31759300 |
T |
|
| Q |
107 |
tctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgatttctt |
206 |
Q |
| |
|
| | | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
31759299 |
tttgtttgaacttgtttgtaacttttgggcggtcttcaatggtacaccttatgccgtgaagattggttgtcgtttatattatatttcattttgatttctt |
31759200 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 20848205 - 20848007
Alignment:
| Q |
7 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtttgc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
20848205 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgtcaggccccgttcctttgtgcgggcattagttgatttttgtttgt |
20848106 |
T |
|
| Q |
107 |
tctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgatttct |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
20848105 |
tctatctgaacttgtttgtaacttttgggcggtcttcaatggtacaccttgtgccgtgaagattggttgtcgtttatattatatttcattttgatttct |
20848007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 1118490 - 1118291
Alignment:
| Q |
7 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtttgc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1118490 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgtcagaccccgttcctttgtgcgggcattggttgatttttgattgc |
1118391 |
T |
|
| Q |
107 |
tctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgatttctt |
206 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1118390 |
tctgtttgaacttgtttgtaacttttgggcggtcttcaatggtacaccttgtgccgtgaagattggctgtcgtttatattatatttcattttgatttctt |
1118291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 5278608 - 5278806
Alignment:
| Q |
7 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtttgc |
106 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5278608 |
tttggtggtttaaggttaaatttactgtatttccttattgttttcatgattggtgctaggccccgttcctttgtgcgggcattagttgatttttgtttgt |
5278707 |
T |
|
| Q |
107 |
tctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgatttct |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5278708 |
tctatctgaacttgtttgtaacttttgggcggtcttcagtggtacaccttgtgccgtgaagattggctgtcgtttatattatatttcattttgatttct |
5278806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 6017760 - 6017562
Alignment:
| Q |
7 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtttgc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
6017760 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgtcaggccccgttcctttgtgtgggcattagttgatttttgtttgt |
6017661 |
T |
|
| Q |
107 |
tctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgatttct |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6017660 |
tctatctgaacttgtttgtaacttttgggcggtcttcaatggtacaccttgtgccgtgaagattgcctgtcgtttatattatatttcattttgatttct |
6017562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 5696803 - 5697001
Alignment:
| Q |
7 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtttgc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5696803 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgtcaggccccgttcctttgtgcgggcattagttgatttttgtttgt |
5696902 |
T |
|
| Q |
107 |
tctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgatttct |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5696903 |
cctatctgaacttgtttgtaacttttgggcagtcttgaatggtacaccttgtgccgtgaagattggctgtcgtttatattatatttcattttgatttct |
5697001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 25036651 - 25036831
Alignment:
| Q |
7 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtttgc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25036651 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgtcaggccccgttcctttgtgcgggcattggttgatttttgtttgc |
25036750 |
T |
|
| Q |
107 |
tctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatatta |
187 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||| | |||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
25036751 |
tctatctgaacttgtttataacttttggacggtcttcaatgatacaccttgtgccgtgaagattgactgtcgtttatatta |
25036831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 8643856 - 8644055
Alignment:
| Q |
7 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtttgc |
106 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||| || |||| ||||||||||| |||||||||||||||||| |||| |
|
|
| T |
8643856 |
tttggtggtttaaggctaaattgactgtatttccttattattttcatgattggtgccagacccctttcctttgtgcaggcattggttgatttttgattgc |
8643955 |
T |
|
| Q |
107 |
tctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgatttctt |
206 |
Q |
| |
|
||| | ||||| |||||||||||||| |||||||||| |||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8643956 |
tctgtttgaacagatttgtaacttttggacggtcttcaatggtacaccttgtgctgtgaagattggctgtcgtttataatatatttcattttgatttctt |
8644055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 221 - 344
Target Start/End: Original strand, 49125189 - 49125312
Alignment:
| Q |
221 |
gctaataagtactaaaatggcgtcaagctttattattaattaatttgctttaagaaaaagtaaaagaggtaacaaacagtgaaatttggacaaaacaagt |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49125189 |
gctaataagtactaaaatggcgtcaagctttattattaattaatttactttaagaaaaagtaaaagaggtaacaaacagtgaaatttggacaaaacaagt |
49125288 |
T |
|
| Q |
321 |
ggaatgataagcgaagatgtctcc |
344 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
49125289 |
ggaatgataagcgaagatgtctcc |
49125312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 36439001 - 36438818
Alignment:
| Q |
7 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtttgc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
36439001 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggt----------------ttgtgcgggcattggttgatttttgattgt |
36438918 |
T |
|
| Q |
107 |
tctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgatttctt |
206 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36438917 |
tctctttgaacttgtttgtaacttttgggcggtcttcaatggtacaccttgtgtcgtgaagattgactgtcgtttatattatatttcattttgatttctt |
36438818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 7 - 169
Target Start/End: Original strand, 34793135 - 34793297
Alignment:
| Q |
7 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtttgc |
106 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| ||||||||||||| |||| ||| | ||||| || ||||||||||||||||| ||||||||||| || |
|
|
| T |
34793135 |
tttggtggtttaaagctaaattttatgtatttcgttattgttttcataattgatgccaagccccttttctttgtgcgggcattggctgatttttgttagc |
34793234 |
T |
|
| Q |
107 |
tctatctgaacttgtt-tgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagat |
169 |
Q |
| |
|
| |||||||| | || ||| | || | ||| |||||||| |||||||||| |||||| ||||| |
|
|
| T |
34793235 |
tacatctgaacatattatgt-atttcttggctgtcttcaaaggtacaccttgtgccgtaaagat |
34793297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 40076819 - 40076762
Alignment:
| Q |
149 |
tacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgatttctt |
206 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40076819 |
tacacattgtgccgtgaagattgattgtcgtttatattatatttcattttgatttctt |
40076762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 4372917 - 4373116
Alignment:
| Q |
7 |
tttggtggtttaaggctaaatttactgtatttccttattgttttcatgattggtgcaaggccccgttcctttgtgcgggcattggttgatttttgtttgc |
106 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | ||| |||| |||||||| |||||||| |||||||||||||| |
|
|
| T |
4372917 |
tttggtggtttagagctaaatttactgtatttccttattgttttcattattggtgccaagcctcgtttctttgtgcaggcattggctgatttttgtttgc |
4373016 |
T |
|
| Q |
107 |
tctatctgaacttgtttgtaacttttgggcggtcttcaacggtacaccttatgccgtgaagattggctgtcgtttatattatatttcattttgatttctt |
206 |
Q |
| |
|
| ||| |||| | | |||| || ||||||| ||| ||||||| |||||| ||||| || ||||||| || ||||||||||||||||||||| |
|
|
| T |
4373017 |
tacatcagaacagatacaatattttttggttgtcttcagcggcacaccttgtgccgtaaagataggttgtcgttcgtaatatatttcattttgatttctt |
4373116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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