View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361_low_18 (Length: 279)
Name: NF9361_low_18
Description: NF9361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 21 - 261
Target Start/End: Complemental strand, 5379556 - 5379316
Alignment:
| Q |
21 |
ctcgactcatcgtcaccgataacaatgccacaaaaactaccttgcttaaaactaactctcaattcaagtctcaaagaccatgtatgatagatatatgctc |
120 |
Q |
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| T |
5379556 |
ctcgactcatcgtcaccgataacaatgccacaaaaactaccttgcttaaaactaactctcaattcaagtctcaaagaccatgtatgatagatatatgctc |
5379457 |
T |
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| Q |
121 |
cacaagaagactttcaatacccttagcttaccctacaagtacaattaacatttaataccaacatgcttatataatataattgtataataaagtcttgtaa |
220 |
Q |
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| T |
5379456 |
cacaagaagactttcaatacccttagcttaccctacaagtacaattaacatttaataccaacatgcttatataatataattgtataataaagtcttgtaa |
5379357 |
T |
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| Q |
221 |
ccaaattcaaaccatatttatcacaatctctctcaagttta |
261 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |
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| T |
5379356 |
ccaaattcaaaccatatttatcacaaactctctcaagttta |
5379316 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 237
Target Start/End: Original strand, 43262185 - 43262218
Alignment:
| Q |
204 |
ataataaagtcttgtaaccaaattcaaaccatat |
237 |
Q |
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| T |
43262185 |
ataataaagtcttgtaaccaaatccaaaccatat |
43262218 |
T |
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