View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361_low_28 (Length: 258)
Name: NF9361_low_28
Description: NF9361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 21 - 251
Target Start/End: Original strand, 38312091 - 38312321
Alignment:
| Q |
21 |
aagtcacacactatatatttcttgagaaaacaattccattcacccattatctaatggtggaagagaaactgctgctgttggcagcagcacgacttgttca |
120 |
Q |
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| T |
38312091 |
aagtcgcacactatatatttcttgagaaaacaattccattcacccattatctaatggtggaagagcaactgctgctgttggcagcagcacaacttgttca |
38312190 |
T |
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| Q |
121 |
ggacctaaaactgtaagaagatggttgaaagaaagaggaaagcaaaatacataatgctcagcagcacactaccattactgtggctgctttagcttccatt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38312191 |
ggacctaaaactgtaagaagatggttgaaagaaagaggaaagcaaaatacataatgctcagcagcacactactattactgtggctgctttagcttccatt |
38312290 |
T |
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| Q |
221 |
gtggccacaacatcagcctcgtcaacaccaa |
251 |
Q |
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| T |
38312291 |
gtggccacaacagcagcctcgtcaacaccaa |
38312321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 38268316 - 38268420
Alignment:
| Q |
48 |
aaacaattccattcacccattatctaatggtggaagagaaactgctgctgttggcagcagcacgacttgttcaggacctaaaactgtaagaagatggttg |
147 |
Q |
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||||||||||||||||||||||| ||||||||||||| || ||| | |||||||| | ||||| ||||||||||||||||||||||| |||| |||||| |
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| T |
38268316 |
aaacaattccattcacccattattcaatggtggaagagcaagtgccggtgttggcaacggcacggcttgttcaggacctaaaactgtaggaaggtggttg |
38268415 |
T |
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| Q |
148 |
aaaga |
152 |
Q |
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||||| |
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| T |
38268416 |
aaaga |
38268420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 38268434 - 38268493
Alignment:
| Q |
149 |
aagaaagaggaaagcaaaatacataatgctcagcagcacactaccattactgtggctgct |
208 |
Q |
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| T |
38268434 |
aagaaagaagaaagcagaacacaaaatgctcagctgcacgctactattactgtggctgct |
38268493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 31707711 - 31707668
Alignment:
| Q |
113 |
cttgttcaggacctaaaactgtaagaagatggttgaaagaaaga |
156 |
Q |
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| T |
31707711 |
cttgttcaggacctaaaacagtaggaagatggttgaaagaaaga |
31707668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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