View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9361_low_30 (Length: 252)
Name: NF9361_low_30
Description: NF9361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361_low_30 |
 | |
|
| [»] chr4 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 42686046 - 42685795
Alignment:
| Q |
1 |
tcctagatttctgaaacatataaatagatttatcaatcaatgagaaattttaaatgatagcaaaagaaaaataactcaaactcctgccttaaacacttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42686046 |
tcctagatttctgaaacatataaatagatttatcaatcaatgagaaattttaaatgatagcaaaagaaaaataactcaaactcctgccttaaacacttac |
42685947 |
T |
|
| Q |
101 |
cttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataaccaatgcctgccacagaaggnnnnnnnnncaaggcataaaacatgtgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42685946 |
cttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataaccaatgcctgccacagaaggaaaaaaaaacaaggcataaaacatgtgt |
42685847 |
T |
|
| Q |
201 |
ttcacaaaaataaatagattggataagagtacagaataaacttaccgagaat |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42685846 |
ttcacaaaaataaatagattggataagagtacagaataaacttaccgagaat |
42685795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 21185787 - 21185728
Alignment:
| Q |
101 |
cttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataaccaatgcc |
160 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21185787 |
cttggcccatggtaacttgtcatcagaacaacctcttggaaattcattataaccaatgcc |
21185728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 27119385 - 27119326
Alignment:
| Q |
101 |
cttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataaccaatgcc |
160 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27119385 |
cttggcccatggtaacttgtcatcagaacaacctcttggaaattcattataaccaatgcc |
27119326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University