View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361_low_36 (Length: 244)
Name: NF9361_low_36
Description: NF9361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 39937456 - 39937237
Alignment:
| Q |
18 |
acatcaattagtaaaattgtctagctaagtggattatatgattgtgaatttgtgattgtcttcccttggtctgcccattgggtagtggagaatataattc |
117 |
Q |
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| T |
39937456 |
acattaattagtaaaattgtttagctaagtggattatatgattgtgaatttgtgattgtcttaccttggtctgcccattgggtattggagaatataattc |
39937357 |
T |
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| Q |
118 |
aaaagggcaatgcatagagtagcacagaaagacattatagcatattctttcccaacaaaagttaatttattggagaaaataacatttttgttattctgta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39937356 |
aaaagggcaatgcatagagtagcacagaaagacattatagcatattctttccaaacaaaagttaatttattggagaaaataacatttttgttattctgta |
39937257 |
T |
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| Q |
218 |
aagacattatagtataatct |
237 |
Q |
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|||||||||||||||||||| |
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| T |
39937256 |
aagacattatagtataatct |
39937237 |
T |
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