View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9361_low_39 (Length: 242)

Name: NF9361_low_39
Description: NF9361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9361_low_39
NF9361_low_39
[»] chr5 (3 HSPs)
chr5 (19-242)||(39954598-39954815)
chr5 (19-88)||(1685210-1685279)
chr5 (100-136)||(35539209-35539245)
[»] chr2 (1 HSPs)
chr2 (19-73)||(44800473-44800527)
[»] scaffold0759 (1 HSPs)
scaffold0759 (100-136)||(3423-3459)
[»] chr3 (2 HSPs)
chr3 (100-137)||(48519654-48519691)
chr3 (19-87)||(41053620-41053688)
[»] scaffold0376 (1 HSPs)
scaffold0376 (100-136)||(10783-10819)
[»] chr7 (1 HSPs)
chr7 (100-135)||(3795718-3795753)
[»] chr6 (2 HSPs)
chr6 (19-86)||(11168726-11168793)
chr6 (105-137)||(11207668-11207700)
[»] chr8 (2 HSPs)
chr8 (100-137)||(32847203-32847240)
chr8 (100-137)||(41531768-41531805)
[»] chr1 (4 HSPs)
chr1 (19-88)||(52037551-52037620)
chr1 (19-87)||(13624129-13624197)
chr1 (100-136)||(17672393-17672429)
chr1 (100-136)||(18815133-18815169)


Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 39954598 - 39954815
Alignment:
Q  19 ttagtacacttggattttatattgataaattggtttcatttgtcttattcaaacatgtattaatgattttcnnnnnnnctgtattcaacccgtgcttcgc 118  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||    
T  39954598 ttagtacacttagattttatattggtaaattggtttcatttgtcttattcaaacatgtattaatgattttcaaaaaaaatgtattcaacccgtgcttcgc 39954697  T
Q  119 acgggtttataactagtttgtgaaaagnnnnnnnnnnnctgttttgatctcctttcatatcgactaaacgtttatttgtatttcatatataatataaatt 218  Q
    ||||||||||||||||||||||||||             |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  39954698 acgggtttataactagtttgtgaaaaaaaaaat------tgttttgatctcctttcatatcgattaaatgtttatttgtatttcatatataatataaatt 39954791  T
Q  219 gactaattttatcggactttactt 242  Q
    || |||||||||||||||||||||    
T  39954792 gaataattttatcggactttactt 39954815  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 1685279 - 1685210
Alignment:
Q  19 ttagtacacttggattttatattgataaattggtttcatttgtcttattcaaacatgtattaatgatttt 88  Q
    |||||||||||||||||||| ||   ||||  |||||||||| ||||||||||||| || ||| ||||||    
T  1685279 ttagtacacttggattttatcttaggaaatcagtttcatttgacttattcaaacatatagtaaggatttt 1685210  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 35539245 - 35539209
Alignment:
Q  100 tattcaacccgtgcttcgcacgggtttataactagtt 136  Q
    |||| |||||||||||||||||||||| |||||||||    
T  35539245 tattgaacccgtgcttcgcacgggtttgtaactagtt 35539209  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 44800473 - 44800527
Alignment:
Q  19 ttagtacacttggattttatattgataaattggtttcatttgtcttattcaaaca 73  Q
    |||||||||||||||||||| ||  ||||| ||||||||||||||||||||||||    
T  44800473 ttagtacacttggattttatcttagtaaatcggtttcatttgtcttattcaaaca 44800527  T

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Target: scaffold0759 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 3459 - 3423
Alignment:
Q  100 tattcaacccgtgcttcgcacgggtttataactagtt 136  Q
    |||||||||||||||||||||||||||||||||||||    
T  3459 tattcaacccgtgcttcgcacgggtttataactagtt 3423  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 48519691 - 48519654
Alignment:
Q  100 tattcaacccgtgcttcgcacgggtttataactagttt 137  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  48519691 tattcaacccgtgcttcgcacgggtttgtaactagttt 48519654  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 41053620 - 41053688
Alignment:
Q  19 ttagtacacttggattttatattgataaattggtttcatttgtcttattcaaacatgtattaatgattt 87  Q
    |||||||||||||||||||| ||   |||| |||||||||||||||||||| |||| || ||| |||||    
T  41053620 ttagtacacttggattttatcttaggaaatcggtttcatttgtcttattcagacatatagtaaggattt 41053688  T

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Target: scaffold0376 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 10819 - 10783
Alignment:
Q  100 tattcaacccgtgcttcgcacgggtttataactagtt 136  Q
    ||||||||||||||||||||||||||| |||||||||    
T  10819 tattcaacccgtgcttcgcacgggtttgtaactagtt 10783  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 135
Target Start/End: Original strand, 3795718 - 3795753
Alignment:
Q  100 tattcaacccgtgcttcgcacgggtttataactagt 135  Q
    ||||||||||||||||||||||||||| ||||||||    
T  3795718 tattcaacccgtgcttcgcacgggtttgtaactagt 3795753  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 11168726 - 11168793
Alignment:
Q  19 ttagtacacttggattttatattgataaattggtttcatttgtcttattcaaacatgtattaatgatt 86  Q
    |||| ||||||||||||||| || | ||||  |||||||||| |||||||||||||||| ||| ||||    
T  11168726 ttaggacacttggattttatcttaagaaatcagtttcatttgacttattcaaacatgtagtaaggatt 11168793  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 11207668 - 11207700
Alignment:
Q  105 aacccgtgcttcgcacgggtttataactagttt 137  Q
    |||||||||||||||||||||| ||||||||||    
T  11207668 aacccgtgcttcgcacgggtttgtaactagttt 11207700  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 32847203 - 32847240
Alignment:
Q  100 tattcaacccgtgcttcgcacgggtttataactagttt 137  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  32847203 tattcaacccgtgctttgcacgggtttgtaactagttt 32847240  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 41531805 - 41531768
Alignment:
Q  100 tattcaacccgtgcttcgcacgggtttataactagttt 137  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  41531805 tattcaacccgtgtttcgcacgggtttgtaactagttt 41531768  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 52037620 - 52037551
Alignment:
Q  19 ttagtacacttggattttatattgataaattggtttcatttgtcttattcaaacatgtattaatgatttt 88  Q
    |||||||||||||||||||| ||   ||||  |||||||||| ||||||||||||| || ||| ||||||    
T  52037620 ttagtacacttggattttatcttaggaaatcagtttcatttgacttattcaaacatatagtaaggatttt 52037551  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 13624129 - 13624197
Alignment:
Q  19 ttagtacacttggattttatattgataaattggtttcatttgtcttattcaaacatgtattaatgattt 87  Q
    |||||||||||||||||||| ||   ||||  |||||||||| ||||||||||||| || ||| |||||    
T  13624129 ttagtacacttggattttatcttaggaaatcagtttcatttgacttattcaaacatatagtaaggattt 13624197  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 17672393 - 17672429
Alignment:
Q  100 tattcaacccgtgcttcgcacgggtttataactagtt 136  Q
    |||| |||||||||||||||||||||| |||||||||    
T  17672393 tattgaacccgtgcttcgcacgggtttgtaactagtt 17672429  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 18815133 - 18815169
Alignment:
Q  100 tattcaacccgtgcttcgcacgggtttataactagtt 136  Q
    |||| |||||||||||||||||||||| |||||||||    
T  18815133 tattaaacccgtgcttcgcacgggtttgtaactagtt 18815169  T

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