View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361_low_4 (Length: 471)
Name: NF9361_low_4
Description: NF9361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 430796 - 430357
Alignment:
| Q |
1 |
atacggtgaccggttctttctcaactttgagaagatcactcatgtatctaatgatcttccaaaacaaaaaagtacaaactaaaacaagaacaattttttg |
100 |
Q |
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| T |
430796 |
atacggtgaccggttctttctcaactttgagaagatcactcatgtatctaatgatcttccaaaacaaaaaagtacaaactaaaacaagaacaattttttg |
430697 |
T |
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| Q |
101 |
aaggactgttttgtccataatatccaaaccaaacatttccatgttgatcactctttgttaggattctaaggaaacaatctacttcaccatctttttattt |
200 |
Q |
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| T |
430696 |
aaggactgttttgtccataatatccaaaccaaacatttccatgtt---cactctttgttaggattctaaggaaacaatctacttcaccatctttttattt |
430600 |
T |
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| Q |
201 |
aacaagtttgaaaatcaatttaaaattaaagaatcaattcacattactcttgagcaaggcaatcatcatataccagaaccaagtccgcaagaaatgcaag |
300 |
Q |
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| T |
430599 |
aacaagtttgaaaatcaatttaaaattaaagaatcaatgcacattactcttgagcaaggcaatcatcatataccagaaccaagtccgcaagaaatgcaag |
430500 |
T |
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| Q |
301 |
tacaagagaataacacgtaccttagcaacaaagaaaagaacnnnnnnnnnnnnnnnnnnnnnatggaatttaatcaacgaataattaattatatacatgc |
400 |
Q |
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| T |
430499 |
tacaagagaataacacgtaccttagcaacaaagaaaagaac------ttttttttttattttatggaattttatcaacgaataattaattatatacatgc |
430406 |
T |
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| Q |
401 |
aaatgaaatataaaatcaatattaggaaagaaaaagttgtttttaaggg |
449 |
Q |
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| T |
430405 |
aaatgaaatataaaatcaatattaggaaagaaaaagttgtttttaaggg |
430357 |
T |
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