View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361_low_43 (Length: 230)
Name: NF9361_low_43
Description: NF9361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 35645668 - 35645875
Alignment:
| Q |
12 |
agcagagaagggatcagattgttgatacagaggacattgtcaataattcacttaacctgcctttaccaccaccacctccccctctgcctc---tatggga |
108 |
Q |
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| T |
35645668 |
agcagagaagggatcagattgttgatacagaggacattgtcaataattcacttaacctgcctttaccaccaccacctccccctctgcctcctctatggga |
35645767 |
T |
|
| Q |
109 |
tcgacactcacgtcatgacaattggacacagcagaacggcataaacaatcagcgccgaggaactgtgaattcatttgcaggacacaaccgatttccttta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35645768 |
tcgacactcacgtcatgacaattggacacagcagaacggcataaacaatcagcgccgaggaactgtgaattcatttgcaggacacaaccgatttccttta |
35645867 |
T |
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| Q |
209 |
gctgatgt |
216 |
Q |
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|||||||| |
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| T |
35645868 |
gctgatgt |
35645875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 11438957 - 11439160
Alignment:
| Q |
12 |
agcagagaagggatcagattgttgatacagaggacattgtcaataattcacttaacctgcctttaccaccaccacctccccctctgcctctatgggatcg |
111 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11438957 |
agcagagaagggatcagattgttgatacggaggacattgtcaataattcacttaacctgcctttaccaccacctcctccccctctgcctctatgggatcg |
11439056 |
T |
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| Q |
112 |
acactcacgtcatgacaattggacacagcagaacggcataaacaatcagcgccgaggaactgtgaattcatttgcaggacacaaccgatttcctttagct |
211 |
Q |
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|||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11439057 |
acacacacgtcatgacaattggactcagcagaatggcataaacaatcagcgccgaggaactgtgaattcatttgcaggacacaaccgctttcctttagct |
11439156 |
T |
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| Q |
212 |
gatg |
215 |
Q |
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|||| |
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| T |
11439157 |
gatg |
11439160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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