View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361_low_6 (Length: 456)
Name: NF9361_low_6
Description: NF9361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 42686041 - 42686480
Alignment:
| Q |
1 |
ctaggaccgggaatcctttggagaccaagtacccgtgagtgttttcaaatcatatttcactcttgttgtaaccttaatcatgttctcgctcaagtctttt |
100 |
Q |
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| T |
42686041 |
ctaggaccgggaatcctttggagaccaagtacccgtgagtgttttcaaatcatatttcactcttgttgtaaccttaatcatgttctcgctcaagtctttt |
42686140 |
T |
|
| Q |
101 |
aattaatcaggatgactttgataatggtttttctgttcttcctattctagttatgtttgtcatgctgaagtaaatgctattcttaacacaaaccatgcct |
200 |
Q |
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| T |
42686141 |
cattaataaggatgactttgataatggtttttctgttcttcctattctagttatgtttgtcatgctgaagtaaatgctattcttaacacaaaccatgcct |
42686240 |
T |
|
| Q |
201 |
ctgctgctggacaagtgagttcctctgtacctctctaattaacatatcgtagcttctggatattattttccttatactttatttatgacattccttttgt |
300 |
Q |
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| T |
42686241 |
ctgctgctggacaagtgagttcctctgtacctctctaattaacatatcgtagcttctggatattattttccttatactttatttatgacattccttttgt |
42686340 |
T |
|
| Q |
301 |
aacttccacacctggacaatggcattagttttagcacacatataacatgccattgtttacaccagttagcacctagaagaaatttcttatatatttctta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42686341 |
aacttccacacctggacaatggcattagttttagcacacatataacatgccattgtttacaccagttagcacctagaagaaatttcttatatatttctta |
42686440 |
T |
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| Q |
401 |
aatcaagttttattttaccacctgatactaagatattctt |
440 |
Q |
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| T |
42686441 |
aatcaagttttattttaccacctgatactaagatattctt |
42686480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 27119424 - 27119485
Alignment:
| Q |
151 |
ttatgtttgtcatgctgaagtaaatgctattcttaacacaaaccatgcctctgctgctggaca |
213 |
Q |
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| T |
27119424 |
ttatgtttgtcatgctgaagtaaatgctattcttaacacaaaccatgcatctg-tgctggaca |
27119485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 21185826 - 21185887
Alignment:
| Q |
151 |
ttatgtttgtcatgctgaagtaaatgctattcttaacacaaaccatgcctctgctgctggaca |
213 |
Q |
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| T |
21185826 |
ttatgtctgtcatgctgaagtaaatgctattcttaacacaaaccatgcatctg-tgctggaca |
21185887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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