View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9361_low_8 (Length: 403)

Name: NF9361_low_8
Description: NF9361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9361_low_8
NF9361_low_8
[»] chr8 (3 HSPs)
chr8 (14-393)||(38902101-38902481)
chr8 (271-317)||(38464022-38464068)
chr8 (286-323)||(6947877-6947914)
[»] chr6 (1 HSPs)
chr6 (286-317)||(27904565-27904596)
[»] chr2 (1 HSPs)
chr2 (276-322)||(8024661-8024707)
[»] chr1 (1 HSPs)
chr1 (271-317)||(37351439-37351485)
[»] chr3 (1 HSPs)
chr3 (290-323)||(40302651-40302684)
[»] chr5 (2 HSPs)
chr5 (286-322)||(12398449-12398485)
chr5 (271-323)||(22648181-22648232)
[»] chr4 (1 HSPs)
chr4 (271-323)||(12710336-12710388)


Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 14 - 393
Target Start/End: Original strand, 38902101 - 38902481
Alignment:
Q  14 aaaaccactagaggtttggttagtagccaaagacactggctattgggaagtaaaacagttaacagaaattcaatnnnnnnnttagattacaagttaaaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  38902101 aaaaccactagaggtttggttagtagccaaagacactggctattgggaagtaaaacagttaacagaaattcaatcccccccttagattacaagttaaaaa 38902200  T
Q  114 aggtatcaaagctacctaccaaatggtatgtacaccacaggaattgaaaaccaattgcacacattctcaccaaccaatggagatacaattcacaaaataa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38902201 aggtatcaaagctacctaccaaatggtatgtacaccacaggaattgaaaaccaattgcacacattctcaccaaccaatggagatacaattcacaaaataa 38902300  T
Q  214 aactgcatacagatcacagaatagggttttgaaatggaaggctctccattagaaaca-tttttattttattttaaactcggtatccaacccaaggaccga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  38902301 aactgcatacagatcacagaatagggttttgaaatggaaggctctccattagaaacatttttttttttattttaaactcggtatccaacccaaggaccga 38902400  T
Q  313 ctaatttgaggccataagtcaaagtctctccccaaaatagcagaagaatgaaatcctatgatgcacaaacatggacaccac 393  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38902401 ctaatttgaggccataagtcaaagtctctccccaaaatagcagaagaatgaaatcctatgatgcacaaacatggacaccac 38902481  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 317
Target Start/End: Complemental strand, 38464068 - 38464022
Alignment:
Q  271 tttttattttattttaaactcggtatccaacccaaggaccgactaat 317  Q
    ||||||||||||||| ||||||||||||  | |||||||||||||||    
T  38464068 tttttattttatttttaactcggtatcctgctcaaggaccgactaat 38464022  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 323
Target Start/End: Complemental strand, 6947914 - 6947877
Alignment:
Q  286 aaactcggtatccaacccaaggaccgactaatttgagg 323  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  6947914 aaactcgttatccaacccaaggaccgactaatctgagg 6947877  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 286 - 317
Target Start/End: Complemental strand, 27904596 - 27904565
Alignment:
Q  286 aaactcggtatccaacccaaggaccgactaat 317  Q
    ||||||||||||||||||||||||||||||||    
T  27904596 aaactcggtatccaacccaaggaccgactaat 27904565  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 322
Target Start/End: Original strand, 8024661 - 8024707
Alignment:
Q  276 attttattttaaactcggtatccaacccaaggaccgactaatttgag 322  Q
    ||||| ||||||| ||| ||||||| |||||||||||||||||||||    
T  8024661 atttttttttaaaatcgatatccaatccaaggaccgactaatttgag 8024707  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 317
Target Start/End: Original strand, 37351439 - 37351485
Alignment:
Q  271 tttttattttattttaaactcggtatccaacccaaggaccgactaat 317  Q
    ||||| |||| ||||||||||||||||| | ||||||||||||||||    
T  37351439 tttttttttttttttaaactcggtatccgatccaaggaccgactaat 37351485  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 323
Target Start/End: Original strand, 40302651 - 40302684
Alignment:
Q  290 tcggtatccaacccaaggaccgactaatttgagg 323  Q
    |||||||||| |||||||||||||||||||||||    
T  40302651 tcggtatccagcccaaggaccgactaatttgagg 40302684  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 322
Target Start/End: Original strand, 12398449 - 12398485
Alignment:
Q  286 aaactcggtatccaacccaaggaccgactaatttgag 322  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  12398449 aaactcggtatccaatccaagaaccgactaatttgag 12398485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 22648232 - 22648181
Alignment:
Q  271 tttttattttattttaaactcggtatccaacccaaggaccgactaatttgagg 323  Q
    |||||||||| ||||||||||||||||| | |||| ||||||||||| |||||    
T  22648232 tttttatttt-ttttaaactcggtatccgatccaaagaccgactaatctgagg 22648181  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 12710388 - 12710336
Alignment:
Q  271 tttttattttattttaaactcggtatccaacccaaggaccgactaatttgagg 323  Q
    ||||| |||| ||||||||||||||||| | ||||||||||| |||| |||||    
T  12710388 tttttttttttttttaaactcggtatccgatccaaggaccgattaatctgagg 12710336  T

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