View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9361_low_9 (Length: 373)
Name: NF9361_low_9
Description: NF9361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9361_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 7874986 - 7875352
Alignment:
| Q |
1 |
gtggataagaaagtggattaatgagggtaaaactatatgtccaataatagcaaaggaactgcctcatatgacattgactccaaatattgtcatgaaagac |
100 |
Q |
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| T |
7874986 |
gtggataagaaagtggattaatgagggtaaaactatatgtccaaaaacagaaaaggaactgcctcatatgacattgactccaaatattgtcatgaaagac |
7875085 |
T |
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| Q |
101 |
ttaatatcaaagtggtgcaaaaataatggtgtcaccattcctgatccaagtagacatacagaagattttatgttgttggatgcttcaatcacctccatta |
200 |
Q |
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| T |
7875086 |
ttgatatcaaagtggtgcaaaaataatggtgtcaccattcctgatccaagtagacatacagaagattttatgttgttggatgcttcaatcacctccatta |
7875185 |
T |
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| Q |
201 |
agagtttgggaagttatttcaatgatctgaacttgccaatggatcttactaacatgtctcttggatcattggacaatagttttagttccgatgtgtcgcg |
300 |
Q |
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| T |
7875186 |
agagtttgggaagttatttcaatgatctaaacttgccaatggatcttactaacatgtctcttggatcattggacaatagttttagttccgatgtgtcgcg |
7875285 |
T |
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| Q |
301 |
agttaagaccaatcatgccttgaatttgatgatgaccaagagtgatgaaaattctcagcctcacaag |
367 |
Q |
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| T |
7875286 |
agttaagaccaatcatgccttgaatttgatgatgaccaagagtaatgaaaattctcatcctcacaag |
7875352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 32838174 - 32838122
Alignment:
| Q |
101 |
ttaatatcaaagtggtgcaaaaataatggtgtcaccattcctgatccaagtag |
153 |
Q |
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| T |
32838174 |
ttaatatcaaaatggtgcaaaactaatgacgtctccattcctaatccaagtag |
32838122 |
T |
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