View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9362_1 (Length: 551)
Name: NF9362_1
Description: NF9362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9362_1 |
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Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 12 - 532
Target Start/End: Original strand, 54911743 - 54912264
Alignment:
| Q |
12 |
acagaggaatttaatgaggagagcatgggatcaaatggaaataaagcaatgagacaaacacaggggttgttttgactaaggagcaagcacaaactttgac |
111 |
Q |
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| T |
54911743 |
acagaggaatttaatgaggagagcatgggatcaaatggaaataaagcaatgagacaaacacaggggttgttttgactaaggagcaagcacaaactttgac |
54911842 |
T |
|
| Q |
112 |
taggaatgcgggtggtaattcattggtatatccaaatcaggttttgaatactagatgggaaaacaatgggatgatttgtttatgatacacgctaatcatg |
211 |
Q |
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| T |
54911843 |
taggaatgcgggtggtaattcattggtatatccaaatcaggttttgaatactagatgggaaaacaatgggatgatttgtttatgatacacgctaatcatg |
54911942 |
T |
|
| Q |
212 |
tgcacttggctttgtatgacatacgcaatcaagcattcagacttcagacttgagctattcttctctaattgagggttaagtcaagctttcgtgtggacaa |
311 |
Q |
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| T |
54911943 |
tgcacttggctttgtatgacatacgcaatcaagcattcagacttcagacttgagctattcttttctaattgagggttaagtcaagctttcatgtggacaa |
54912042 |
T |
|
| Q |
312 |
aatcatcatcaagctaaataggaaattacagaaacgccgtatcaggacagaagcctc-aaaagaaacgattgatcaaatataaccagaaaagggaacaca |
410 |
Q |
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| T |
54912043 |
aatcatcatcaagctaaataggaaattacagaaacgccgtatcaggacagaagcctcaaaaagaaacgattgatcaaatataaccagaaaagggaacaca |
54912142 |
T |
|
| Q |
411 |
attgcataaactgattacatacatagatggaaagaaagacatacttacatgtataacaaacaccggacagttgacataccgaattttgtctatattctga |
510 |
Q |
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| T |
54912143 |
attgcataaactgattacatacatagatggaaagaaagacatacttacatgtataacaaacaccggacatttgacataccgaattttgtctatattctga |
54912242 |
T |
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| Q |
511 |
aacgaaattgaaaacttttgtt |
532 |
Q |
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| T |
54912243 |
aacgaaattgaaaacttttgtt |
54912264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 213
Target Start/End: Original strand, 54917164 - 54917309
Alignment:
| Q |
69 |
acacaggggttgttttgactaaggagcaagcacaaactttgactaggaatgcgggtggtaattcattggtatatccaaatcaggttttgaatactagatg |
168 |
Q |
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||||||| |||| |||||| || || ||| ||||||||||||||||||| | |||||||| || || |||||||||| | | ||||||||||||| |
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| T |
54917164 |
acacaggtgttgctttgacaaaagaacaaacacaaactttgactaggaaagtcggtggtaactcgttaatatatccaaaacggtttttgaatactaggca |
54917263 |
T |
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| Q |
169 |
gga-aaacaatgggatgatttgtttatgatacacgctaatcatgtg |
213 |
Q |
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| T |
54917264 |
agattaacaatgggatgatttatctatgatatacgctaatcatgtg |
54917309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 207
Target Start/End: Complemental strand, 54918110 - 54917977
Alignment:
| Q |
75 |
gggttgttttgactaaggagcaagcacaaactttgactaggaatgcgggtggtaattcattggtatatccaaatcaggttttgaatactagatggga-aa |
173 |
Q |
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||||||||||||||| | ||||||||||||||| |||| |||||| ||| |||| || ||| |||||||| | | ||||||||||||| ||||| | |
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| T |
54918110 |
gggttgttttgactaggtagcaagcacaaacttccactatgaatgctggttgtaactcgttgatatatccataacgatttttgaatactaggtgggatga |
54918011 |
T |
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| Q |
174 |
acaatgggatgatttgtttatgatacacgctaat |
207 |
Q |
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| T |
54918010 |
acaatggggtgatttgtctctgatacatgctaat |
54917977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 54918230 - 54918186
Alignment:
| Q |
14 |
agaggaatttaatgaggagagcatgggatcaaatggaaataaagc |
58 |
Q |
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| T |
54918230 |
agaggaatttagtgacgaaagcatgagatcaaatggaaataaagc |
54918186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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