View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9362_2 (Length: 504)
Name: NF9362_2
Description: NF9362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9362_2 |
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Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 21 - 474
Target Start/End: Complemental strand, 42393712 - 42393259
Alignment:
| Q |
21 |
acatcatcataaagagacgtctgccctcatcgagcatctttttcaagattttgaagaaaacatcagcagaggactgggatgttccagtattgcttgctat |
120 |
Q |
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| T |
42393712 |
acatcatcataaagagacgtctgtcctcatcgagcatctttttcaagattttgaagaaaacatcagcagaggactgggatgttccagtattgcttgctat |
42393613 |
T |
|
| Q |
121 |
aatatgcgaagatttccccaacattgctttgctatcgggcagataagaaaaacatgcttgcagtcttcaggttcagaatcacatagaatgcaaatatctt |
220 |
Q |
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| T |
42393612 |
aatatgcgaagatttccccaacattgctttgctatcgggcagataagaaaaacatgcttgcagtcttcaggttcagaatcacatagaatacaaatatctt |
42393513 |
T |
|
| Q |
221 |
cacactgaacccgtttattgattagatttccgcgggcaggcaagcaatcatggagggatcaccataggaaggggcggacgcatgtaggaatatgcagttt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393512 |
cacactgaacccgtttattgattagatttccgcgggtaggcaagcaatcatggagggatcaccataggaaggggcggacgcatgtaggaatatgcagttt |
42393413 |
T |
|
| Q |
321 |
ccaaattacactccaattgcgttgaatgaattcatgagcaggttcaacaattagcaattagcttcatacgtaagttgtatgaagacttgacagaaaattt |
420 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| |
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| T |
42393412 |
ccaaattacactccaattgcgttgaatgaattcacgagcaggttcaacaattagcaattagcctcatacgtaagctgtatgaagacttgacagaatattt |
42393313 |
T |
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| Q |
421 |
tccatcacttgacacattccagatacgacagtccatgatatctctgctaaaaag |
474 |
Q |
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| T |
42393312 |
tccatcacttgacacattccagatacgacagtccatgatatctctgctaaaaag |
42393259 |
T |
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