View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9362_3 (Length: 488)
Name: NF9362_3
Description: NF9362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9362_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 27 - 468
Target Start/End: Original strand, 29752502 - 29752946
Alignment:
| Q |
27 |
tttcaaaggatatccttgaagttattggccaatgttgccctcttttgaagtcactaaacctggagaggttgtctgtcgatggcatgcctgctgtgtactc |
126 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
29752502 |
tttctaaggatatccttgaagttattggccaatgttgccctcttttgaagtcactaaacctggagaggttgtctgtcgatggcatgcctactgtgtactc |
29752601 |
T |
|
| Q |
127 |
ttattacaagggtgatgaagcattttgtattgcaaaaacaatgagtgggttacgccatctaaaattgcttggattttggctttactatgatgaattgctt |
226 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
29752602 |
ttattgcaagggtgatgaagcattttgtattgcaaaaacaatgagtgggttacgccatctaaaattgcttggattatggcttaactatgatgaattgctt |
29752701 |
T |
|
| Q |
227 |
gctattcttgacggttgcccgcttctcgaatctcttgatctgcgaggttgcatttattattattccaatccaagtttacttaaaaggtgcagtgagcaaa |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
29752702 |
gctattcttgacggttgcccgcttctcgaatctcttgatctgcgattttgcatttattattcttccaaccaaagtttacttaaaaggtgcagtgagcaaa |
29752801 |
T |
|
| Q |
327 |
ttaaagattttcaccatccacttatctattagatggcaattaattgctaccatgatgatgatttagctaatatggacacttctgcagatgcatatgta-- |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29752802 |
ttaaagattttcaccatccacttatctattagatggcaattaattgctaccatgatgatgatttagctaatatggacacttctgcagatacatatgtaat |
29752901 |
T |
|
| Q |
425 |
-atgattgggagtattagacaattgactctgattgttgatgatgt |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29752902 |
gatgattgggagtattagacaattgactctgattgttgacgatgt |
29752946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 210 - 336
Target Start/End: Complemental strand, 29729925 - 29729793
Alignment:
| Q |
210 |
actatgatgaattgcttgctattcttgacggttgcccgcttctcgaatctcttgatctgcgaggttgcatttattattatt------ccaatccaagttt |
303 |
Q |
| |
|
|||||| || ||||||||||||||||||| | ||||| ||||| |||||||||||||||| | ||| || |||||||||| ||||||||||||| |
|
|
| T |
29729925 |
actatgttggattgcttgctattcttgaccgctgccctcttcttgaatctcttgatctgcaaagttccaggtattattattccaaatccaatccaagttt |
29729826 |
T |
|
| Q |
304 |
acttaaaaggtgcagtgagcaaattaaagattt |
336 |
Q |
| |
|
||||||| ||||| | ||||||||||||||||| |
|
|
| T |
29729825 |
acttaaatggtgctgcgagcaaattaaagattt |
29729793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 29730251 - 29730183
Alignment:
| Q |
32 |
aaggatatccttgaagttattggccaatgttgccctcttttgaagtcactaaacctggagaggttgtct |
100 |
Q |
| |
|
|||||| |||||||| ||||||| | ||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
29730251 |
aaggatttccttgaacttattggtcgatgttgccctcttttgaagtcactaaatcttgagaggttgtct |
29730183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 139 - 275
Target Start/End: Original strand, 29713313 - 29713449
Alignment:
| Q |
139 |
tgatgaagcattttgtattgcaaaaacaatgagtgggttacgccatctaaaattgcttggattttggctttactatgatgaattgcttgctattcttgac |
238 |
Q |
| |
|
|||| |||||||| |||||||||||||||| ||||||| ||||||| |||||| |||||||| | ||| || || |||| ||||||||||||| |
|
|
| T |
29713313 |
tgataaagcatttgttattgcaaaaacaatgtctgggttatgccatcttaaattgaatggattttttagtaactgtggtggattggttgctattcttgat |
29713412 |
T |
|
| Q |
239 |
ggttgcccgcttctcgaatctcttgatctgcgaggtt |
275 |
Q |
| |
|
|| ||||| ||||| ||||||||| |||| ||||||| |
|
|
| T |
29713413 |
ggctgccctcttcttgaatctcttaatctacgaggtt |
29713449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 269
Target Start/End: Complemental strand, 29730142 - 29730029
Alignment:
| Q |
156 |
ttgcaaaaacaatgagtgggttacgccatctaaaattgcttggattttggctttactatgatgaattgcttgctattcttgacggttgcccgcttctcga |
255 |
Q |
| |
|
|||| |||||||||| ||||||||||||||| ||| || |||| ||| || |||||| || ||| ||||||||||||||||| |||| | ||| || |
|
|
| T |
29730142 |
ttgcgaaaacaatgactgggttacgccatcttaaactgaatggaatttatgttaactatgttggatttcttgctattcttgacggctgccatcatcttga |
29730043 |
T |
|
| Q |
256 |
atctcttgatctgc |
269 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
29730042 |
atcttttgatctgc |
29730029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 29713205 - 29713249
Alignment:
| Q |
40 |
ccttgaagttattggccaatgttgccctcttttgaagtcactaaa |
84 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||||||||||||| |
|
|
| T |
29713205 |
ccttgaagttattggtcgaagttgccctcttttgaagtcactaaa |
29713249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 29699689 - 29699739
Alignment:
| Q |
221 |
ttgcttgctattcttgacggttgcccgcttctcgaatctcttgatctgcga |
271 |
Q |
| |
|
|||||||| |||||| | |||||||| ||||| |||||||||||||||||| |
|
|
| T |
29699689 |
ttgcttgccattcttaatggttgccctcttcttgaatctcttgatctgcga |
29699739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 118 - 276
Target Start/End: Complemental strand, 41100314 - 41100156
Alignment:
| Q |
118 |
tgtgtactcttattacaagggtgatgaagcattttgtattgcaaaaacaatgagtgggttacgccatctaaaattgcttggattttggctttactatgat |
217 |
Q |
| |
|
||||||||||||| || ||| |||| |||||||| ||||||||||| |||| ||||||||||||||| ||||| |||||||| || | | |||| | |
|
|
| T |
41100314 |
tgtgtactcttatgacgaggatgataaagcatttgttattgcaaaaataatgtctgggttacgccatcttgaattgaatggatttttgcgtaattatggt |
41100215 |
T |
|
| Q |
218 |
gaattgcttgctattcttgacggttgcccgcttctcgaatctcttgatctgcgaggttg |
276 |
Q |
| |
|
|||||||||| ||||||| || ||||| ||||| ||||||||| |||| |||||||| |
|
|
| T |
41100214 |
agattgcttgctcttcttgatggctgccctcttcttgaatctcttaatctacgaggttg |
41100156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 42563704 - 42563664
Alignment:
| Q |
41 |
cttgaagttattggccaatgttgccctcttttgaagtcact |
81 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
42563704 |
cttgaagccattggacaatgttgccctcttttgaagtcact |
42563664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University