View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9362_6 (Length: 304)
Name: NF9362_6
Description: NF9362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9362_6 |
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| [»] scaffold0256 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 6e-80; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 62 - 292
Target Start/End: Complemental strand, 16873527 - 16873297
Alignment:
| Q |
62 |
acatagacctaattgtgacatagctctgttaaaaagtatccatgttaaatcgtccatgtggtgaacattttcttgcaaatgactcttaagcaacagatca |
161 |
Q |
| |
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|||||| ||||| ||||||||||| ||||||||| ||||| |||| || |||||||||||||| |||||||||| ||||||||| |||||||||||||| |
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| T |
16873527 |
acataggcctaactgtgacatagccctgttaaaacgtatctgtgttgaaacgtccatgtggtgaccattttcttgtaaatgactcgtaagcaacagatca |
16873428 |
T |
|
| Q |
162 |
cgggatttagtgaacacatcatgatgagactggtgatgtatgtgacaaagaattgcaagtgctttatcgtgctcatctccatatttgtatattagtaaca |
261 |
Q |
| |
|
|||| |||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||| |
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|
| T |
16873427 |
cgggctttagtgaactcatcatgatgagaatggtgatgtatatgacaaagcattgcaagtgctttatcaggctcgtctccatatttgtatattagtaaca |
16873328 |
T |
|
| Q |
262 |
ctaatccatccattaaggtcctactgttctc |
292 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |
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|
| T |
16873327 |
ctaatccatccattaaggtcctgctgttctc |
16873297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 16571527 - 16571425
Alignment:
| Q |
62 |
acatagacctaattgtgacatagctctgttaaaaagtatccatgttaaatcgtccatgtggtgaacattttcttgcaaatgactcttaagcaacagatca |
161 |
Q |
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|||||| ||||| ||||||||||| ||||||||| ||||| |||| || ||||| ||||||||||| |||||||||||||| || || ||||||||||| |
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|
| T |
16571527 |
acataggcctaactgtgacatagccctgttaaaatgtatctgtgttgaaacgtccttgtggtgaacagtttcttgcaaatgattcatacgcaacagatca |
16571428 |
T |
|
| Q |
162 |
cgg |
164 |
Q |
| |
|
||| |
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|
| T |
16571427 |
cgg |
16571425 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 16873607 - 16873556
Alignment:
| Q |
6 |
agcagttctttcaaccttccaccggaataaagttgagacagacagtcatgtg |
57 |
Q |
| |
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|||| ||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
16873607 |
agcaattctttcaaccttccaccgaaataaagttcagacagacagtcatgtg |
16873556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 62 - 292
Target Start/End: Complemental strand, 21627882 - 21627647
Alignment:
| Q |
62 |
acatagacctaattgtgacatagctctgttaaaa-----agtatccatgttaaatcgtccatgtggtgaacattttcttgcaaatgactcttaagcaaca |
156 |
Q |
| |
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|||||||||||| ||||||||||| ||||||||| |||||| |||| || ||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
21627882 |
acatagacctaactgtgacatagccctgttaaaataaaaagtatctgtgttgaaacgtccatgtggtgaacattttcttgcaaatgactcataagcaaca |
21627783 |
T |
|
| Q |
157 |
gatcacgggatttagtgaacacatcatgatgagactggtgatgtatgtgacaaagaattgcaagtgctttatcgtgctcatctccatatttgtatattag |
256 |
Q |
| |
|
|||||| || |||||||||| ||| |||| ||| ||||||| ||| | |||||| |||||| |||||| | | |||| ||||| |||||||||||||| |
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|
| T |
21627782 |
gatcacaggctttagtgaactcatgatgaagagcatggtgatatatatcacaaagcattgcacgtgcttgaatgcgctcgtctccgtatttgtatattag |
21627683 |
T |
|
| Q |
257 |
taacactaatccatccattaaggtcctactgttctc |
292 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |
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|
| T |
21627682 |
tgacactaatccatccattaaggtcctactgttctc |
21627647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 62 - 283
Target Start/End: Original strand, 235793 - 236014
Alignment:
| Q |
62 |
acatagacctaattgtgacatagctctgttaaaaagtatccatgttaaatcgtccatgtggtgaacattttcttgcaaatgactcttaagcaacagatca |
161 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| ||| || |||||||||||||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
235793 |
acatagacctaactgtgacatagccctgttaaaaagtatttgtgtcgaaatgtccatgtggtgaacattttcttgcaaatgactcataagcaacaaatca |
235892 |
T |
|
| Q |
162 |
cgggatttagtgaacacatcatgatgagactggtgatgtatgtgacaaagaattgcaagtgctttatcgtgctcatctccatatttgtatattagtaaca |
261 |
Q |
| |
|
|||| | |||||| | ||| || ||| ||||||| ||| | |||||| ||||| |||||||| | |||||||||| ||||||||||| ||| | | |
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|
| T |
235893 |
cgggctactgtgaactcgtcaagaagagcatggtgatatatatcacaaagcattgcgcgtgctttagtgcgctcatctccgtatttgtatatcagtgata |
235992 |
T |
|
| Q |
262 |
ctaatccatccattaaggtcct |
283 |
Q |
| |
|
|||| |||||||||||||||| |
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|
| T |
235993 |
ctaacacatccattaaggtcct |
236014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 232 - 292
Target Start/End: Complemental strand, 32791556 - 32791496
Alignment:
| Q |
232 |
gctcatctccatatttgtatattagtaacactaatccatccattaaggtcctactgttctc |
292 |
Q |
| |
|
|||| ||||| ||||||||||||||| |||||||||||||||||||| |||| |||||||| |
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| T |
32791556 |
gctcgtctccgtatttgtatattagtgacactaatccatccattaagttcctgctgttctc |
32791496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 32791705 - 32791652
Alignment:
| Q |
4 |
cgagcagttctttcaaccttccaccggaataaagttgagacagacagtcatgtg |
57 |
Q |
| |
|
|||||| |||||||| ||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
32791705 |
cgagcaattctttcacccttccaccgggataaagttcagacagacagtcatgtg |
32791652 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 125
Target Start/End: Complemental strand, 32791623 - 32791561
Alignment:
| Q |
62 |
acatagacctaattgtgacatagctctgttaaaaagtatccatgttaaatcgtccatgtggtga |
125 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||| |||| || |||||||||||||| |
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|
| T |
32791623 |
acatagacctaac-gtgacatagccctgttaaaaagtatctgtgttgaaacgtccatgtggtga |
32791561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 21627964 - 21627911
Alignment:
| Q |
4 |
cgagcagttctttcaaccttccaccggaataaagttgagacagacagtcatgtg |
57 |
Q |
| |
|
|||||| |||| ||| ||||||||||| |||||||| ||||||||| ||||||| |
|
|
| T |
21627964 |
cgagcaattctctcacccttccaccgggataaagttcagacagacattcatgtg |
21627911 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 62 - 292
Target Start/End: Original strand, 14422 - 14652
Alignment:
| Q |
62 |
acatagacctaattgtgacatagctctgttaaaaagtatccatgttaaatcgtccatgtggtgaacattttcttgcaaatgactcttaagcaacagatca |
161 |
Q |
| |
|
||||| |||||||||||||||||| |||||| || ||||| |||| || ||||||||||||| |||||||||| |||||||||| |||||||||||||| |
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|
| T |
14422 |
acatacacctaattgtgacatagccctgttagaatgtatctgtgttgaaacgtccatgtggtgcacattttctttcaaatgactcataagcaacagatca |
14521 |
T |
|
| Q |
162 |
cgggatttagtgaacacatcatgatgagactggtgatgtatgtgacaaagaattgcaagtgctttatcgtgctcatctccatatttgtatattagtaaca |
261 |
Q |
| |
|
|||| ||||| |||| |||||||| || ||||||| ||| | || ||| |||||| |||||||| | || ||| | |||||||| |||||| || |
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|
| T |
14522 |
cggggtttagcgaactcatcatgaagaacatggtgatatatatcactaagcattgcacgtgctttagtgcagtcgtctgcgtatttgtagattagtgtca |
14621 |
T |
|
| Q |
262 |
ctaatccatccattaaggtcctactgttctc |
292 |
Q |
| |
|
||||| ||||||||||||||| || ||||| |
|
|
| T |
14622 |
ctaatatatccattaaggtcctgctattctc |
14652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 62 - 161
Target Start/End: Original strand, 12192 - 12291
Alignment:
| Q |
62 |
acatagacctaattgtgacatagctctgttaaaaagtatccatgttaaatcgtccatgtggtgaacattttcttgcaaatgactcttaagcaacagatca |
161 |
Q |
| |
|
|||||| ||||| | ||||||||| ||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||| | |||||||||||| |
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|
| T |
12192 |
acataggcctaactatgacatagccctgttaaaacgtatctgtgttgaaacgtccatgtggtgaacattttcttgcaaatgactcatgagcaacagatca |
12291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 12111 - 12163
Alignment:
| Q |
5 |
gagcagttctttcaaccttccaccggaataaagttgagacagacagtcatgtg |
57 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
12111 |
gagcaattctttcaaccttccaccggaataaagttcagactgacagtcatgtg |
12163 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 62 - 292
Target Start/End: Original strand, 48300216 - 48300446
Alignment:
| Q |
62 |
acatagacctaattgtgacatagctctgttaaaaagtatccatgttaaatcgtccatgtggtgaacattttcttgcaaatgactcttaagcaacagatca |
161 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| |||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
48300216 |
acatagacctaactgtgacatagccctgttaaagagtatctgtgtcgaaatgtccatgtggtgaacattttcttgcaaatgactcataagcaacagatca |
48300315 |
T |
|
| Q |
162 |
cgggatttagtgaacacatcatgatgagactggtgatgtatgtgacaaagaattgcaagtgctttatcgtgctcatctccatatttgtatattagtaaca |
261 |
Q |
| |
|
|||| | ||| |||| || ||| ||||||| ||| | |||||| ||||| |||||||| | |||||||||| ||||||||||||||| | | |
|
|
| T |
48300316 |
cgggcaactgcaaactcatctagaagagcatggtgatatatatcacaaagcattgcgcgtgctttagtgcgctcatctccgtatttgtatattagtgata |
48300415 |
T |
|
| Q |
262 |
ctaatccatccattaaggtcctactgttctc |
292 |
Q |
| |
|
| || |||||||||||||||| || ||||| |
|
|
| T |
48300416 |
ccaacacatccattaaggtcctgctattctc |
48300446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 283
Target Start/End: Complemental strand, 7390008 - 7389791
Alignment:
| Q |
66 |
agacctaattgtgacatagctctgttaaaaagtatccatgttaaatcgtccatgtggtgaacattttcttgcaaatgactcttaagcaacagatcacggg |
165 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
7390008 |
agacctaactgtgacatagccctgttaaaaagtatttgtgtcgaaatgtccatgtggtgaacattttcttgcaaatgactcataagcaacagatcacggg |
7389909 |
T |
|
| Q |
166 |
atttagtgaacacatcatgatgagactggtgatgtatgtgacaaagaattgcaagtgctttatcgtgctcatctccatatttgtatattagtaacactaa |
265 |
Q |
| |
|
| | ||| ||||| || ||| ||||||| ||| | |||||| ||||| |||||||| | |||||||||| ||||| ||||| ||| | ||||| |
|
|
| T |
7389908 |
ctactgcaaactcatcaagaagagcatggtgatatatatcacaaagcattgcgcgtgctttagtgcgctcatctccgtatttatatatcagtgatactaa |
7389809 |
T |
|
| Q |
266 |
tccatccattaaggtcct |
283 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7389808 |
cacatccattaaggtcct |
7389791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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