View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9362_low_1 (Length: 477)

Name: NF9362_low_1
Description: NF9362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9362_low_1
NF9362_low_1
[»] chr6 (10 HSPs)
chr6 (81-357)||(16873251-16873527)
chr6 (313-381)||(16579914-16579982)
chr6 (313-381)||(16615398-16615466)
chr6 (307-378)||(16571346-16571417)
chr6 (81-183)||(16571425-16571527)
chr6 (385-470)||(16579758-16579842)
chr6 (385-470)||(16615538-16615622)
chr6 (277-381)||(17006889-17006993)
chr6 (25-76)||(16873556-16873607)
chr6 (384-426)||(16873123-16873165)
[»] chr2 (8 HSPs)
chr2 (81-377)||(21627581-21627882)
chr2 (251-381)||(32791426-32791556)
chr2 (81-302)||(235793-236014)
chr2 (23-76)||(32791652-32791705)
chr2 (315-378)||(236144-236207)
chr2 (385-428)||(32791269-32791312)
chr2 (81-144)||(32791561-32791623)
chr2 (23-76)||(21627911-21627964)
[»] scaffold0256 (5 HSPs)
scaffold0256 (81-375)||(14422-14716)
scaffold0256 (297-378)||(12293-12374)
scaffold0256 (81-180)||(12192-12291)
scaffold0256 (24-76)||(12111-12163)
scaffold0256 (384-422)||(14842-14880)
[»] chr7 (2 HSPs)
chr7 (81-311)||(48300216-48300446)
chr7 (314-378)||(48300569-48300633)
[»] chr1 (2 HSPs)
chr1 (85-302)||(7389791-7390008)
chr1 (315-378)||(7389598-7389661)


Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 81 - 357
Target Start/End: Complemental strand, 16873527 - 16873251
Alignment:
Q  81 acatagacctaattgtgacatagctctgttaaaaagtatccatgttaaatcgtccatgtggtgaacattttcttgcaaatgactcttaagcaacagatca 180  Q
    |||||| ||||| ||||||||||| ||||||||| |||||  |||| || |||||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  16873527 acataggcctaactgtgacatagccctgttaaaacgtatctgtgttgaaacgtccatgtggtgaccattttcttgtaaatgactcgtaagcaacagatca 16873428  T
Q  181 cgggatttagtgaacacatcatgatgagactggtgatgtatgtgacaaagaattgcaagtgctttatcgtgctcatctccatatttgtatattagtaaca 280  Q
    |||| |||||||||| ||||||||||||| ||||||||||| |||||||| |||||||||||||||||  |||| |||||||||||||||||||||||||    
T  16873427 cgggctttagtgaactcatcatgatgagaatggtgatgtatatgacaaagcattgcaagtgctttatcaggctcgtctccatatttgtatattagtaaca 16873328  T
Q  281 ctaatccatccattaaggtcctactgttctctggctcaaccaatgttctcattgcatcttaaacctcttgaggtttg 357  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||| ||||||||||||||||||    
T  16873327 ctaatccatccattaaggtcctgctgttctccggctcaaccaatgttctcaatgcatcataaacctcttgaggtttg 16873251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 313 - 381
Target Start/End: Complemental strand, 16579982 - 16579914
Alignment:
Q  313 ggctcaaccaatgttctcattgcatcttaaacctcttgaggtttgtagtaaatgagttcaaccctcatc 381  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16579982 ggctcaaccaatgttgtcattgcatcataaacctcttgaggtttgtagtaaatgagttcaaccctcatc 16579914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 313 - 381
Target Start/End: Original strand, 16615398 - 16615466
Alignment:
Q  313 ggctcaaccaatgttctcattgcatcttaaacctcttgaggtttgtagtaaatgagttcaaccctcatc 381  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16615398 ggctcaaccaatgttgtcattgcatcataaacctcttgaggtttgtagtaaatgagttcaaccctcatc 16615466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 16571417 - 16571346
Alignment:
Q  307 ttctctggctcaaccaatgttctcattgcatcttaaacctcttgaggtttgtagtaaatgagttcaaccctc 378  Q
    ||||| || ||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  16571417 ttctccgggtcagccaatgttctcattgccacttaaacctcttgaggtttgtagtaaatgagttcaaccctc 16571346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 16571527 - 16571425
Alignment:
Q  81 acatagacctaattgtgacatagctctgttaaaaagtatccatgttaaatcgtccatgtggtgaacattttcttgcaaatgactcttaagcaacagatca 180  Q
    |||||| ||||| ||||||||||| ||||||||| |||||  |||| || ||||| ||||||||||| |||||||||||||| || || |||||||||||    
T  16571527 acataggcctaactgtgacatagccctgttaaaatgtatctgtgttgaaacgtccttgtggtgaacagtttcttgcaaatgattcatacgcaacagatca 16571428  T
Q  181 cgg 183  Q
    |||    
T  16571427 cgg 16571425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 385 - 470
Target Start/End: Complemental strand, 16579842 - 16579758
Alignment:
Q  385 tgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaannnnnnnnaagatagtaactaagtttccccaaacacgaa 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        |||| || |||||||||||||||||||||||    
T  16579842 tgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaa-tttttttaagaaagcaactaagtttccccaaacacgaa 16579758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 385 - 470
Target Start/End: Original strand, 16615538 - 16615622
Alignment:
Q  385 tgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaannnnnnnnaagatagtaactaagtttccccaaacacgaa 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        |||| || |||||||||||||||||||||||    
T  16615538 tgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaa-tttttttaagaaagcaactaagtttccccaaacacgaa 16615622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 277 - 381
Target Start/End: Original strand, 17006889 - 17006993
Alignment:
Q  277 aacactaatccatccattaaggtcctactgttctctggctcaaccaatgttctcattgcatcttaaa-cctcttgaggtttgtagtaaatgagttcaacc 375  Q
    ||||||||| || |||||| |||||| |||||||| |||||| ||| |||||||||||| || |||| ||||||| ||||||||| |||||| |||||||    
T  17006889 aacactaatgcagccattacggtcctgctgttctccggctcagcca-tgttctcattgcgtcgtaaaacctcttggggtttgtaggaaatgaattcaacc 17006987  T
Q  376 ctcatc 381  Q
    ||||||    
T  17006988 ctcatc 17006993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 16873607 - 16873556
Alignment:
Q  25 agcagttctttcaaccttccaccggaataaagttgagacagacagtcatgtg 76  Q
    |||| ||||||||||||||||||| ||||||||| |||||||||||||||||    
T  16873607 agcaattctttcaaccttccaccgaaataaagttcagacagacagtcatgtg 16873556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 384 - 426
Target Start/End: Complemental strand, 16873165 - 16873123
Alignment:
Q  384 gtgtgtgaggatctatgcattgcaggctcttgaagaactcagc 426  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  16873165 gtgtgtgaggatctatgcattgcaggctcttgaaaaactcagc 16873123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 81 - 377
Target Start/End: Complemental strand, 21627882 - 21627581
Alignment:
Q  81 acatagacctaattgtgacatagctctgttaaaa-----agtatccatgttaaatcgtccatgtggtgaacattttcttgcaaatgactcttaagcaaca 175  Q
    |||||||||||| ||||||||||| |||||||||     ||||||  |||| || ||||||||||||||||||||||||||||||||||| |||||||||    
T  21627882 acatagacctaactgtgacatagccctgttaaaataaaaagtatctgtgttgaaacgtccatgtggtgaacattttcttgcaaatgactcataagcaaca 21627783  T
Q  176 gatcacgggatttagtgaacacatcatgatgagactggtgatgtatgtgacaaagaattgcaagtgctttatcgtgctcatctccatatttgtatattag 275  Q
    |||||| || |||||||||| ||| |||| |||  ||||||| ||| | |||||| |||||| |||||| |  | |||| ||||| ||||||||||||||    
T  21627782 gatcacaggctttagtgaactcatgatgaagagcatggtgatatatatcacaaagcattgcacgtgcttgaatgcgctcgtctccgtatttgtatattag 21627683  T
Q  276 taacactaatccatccattaaggtcctactgttctctggctcaaccaatgttctcattgcatcttaaacctcttgaggtttgtagtaaatgagttcaacc 375  Q
    | |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21627682 tgacactaatccatccattaaggtcctactgttctccggctcagccaatgttctcattgcatcgtaaacctcttgaggtttgtagtaaatgagttcaacc 21627583  T
Q  376 ct 377  Q
    ||    
T  21627582 ct 21627581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 251 - 381
Target Start/End: Complemental strand, 32791556 - 32791426
Alignment:
Q  251 gctcatctccatatttgtatattagtaacactaatccatccattaaggtcctactgttctctggctcaaccaatgttctcattgcatcttaaacctcttg 350  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||| |||| ||||||||  ||||| | ||||||||||||| ||| |||||||||||    
T  32791556 gctcgtctccgtatttgtatattagtgacactaatccatccattaagttcctgctgttctccagctcagctaatgttctcattgtatcgtaaacctcttg 32791457  T
Q  351 aggtttgtagtaaatgagttcaaccctcatc 381  Q
    | |||||||| ||||||||||||||||||||    
T  32791456 aagtttgtaggaaatgagttcaaccctcatc 32791426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 81 - 302
Target Start/End: Original strand, 235793 - 236014
Alignment:
Q  81 acatagacctaattgtgacatagctctgttaaaaagtatccatgttaaatcgtccatgtggtgaacattttcttgcaaatgactcttaagcaacagatca 180  Q
    |||||||||||| ||||||||||| ||||||||||||||   |||  ||  |||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  235793 acatagacctaactgtgacatagccctgttaaaaagtatttgtgtcgaaatgtccatgtggtgaacattttcttgcaaatgactcataagcaacaaatca 235892  T
Q  181 cgggatttagtgaacacatcatgatgagactggtgatgtatgtgacaaagaattgcaagtgctttatcgtgctcatctccatatttgtatattagtaaca 280  Q
    |||| |   |||||| | ||| || |||  ||||||| ||| | |||||| |||||  ||||||||  | |||||||||| ||||||||||| ||| | |    
T  235893 cgggctactgtgaactcgtcaagaagagcatggtgatatatatcacaaagcattgcgcgtgctttagtgcgctcatctccgtatttgtatatcagtgata 235992  T
Q  281 ctaatccatccattaaggtcct 302  Q
    ||||  ||||||||||||||||    
T  235993 ctaacacatccattaaggtcct 236014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 32791705 - 32791652
Alignment:
Q  23 cgagcagttctttcaaccttccaccggaataaagttgagacagacagtcatgtg 76  Q
    |||||| |||||||| ||||||||||| |||||||| |||||||||||||||||    
T  32791705 cgagcaattctttcacccttccaccgggataaagttcagacagacagtcatgtg 32791652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 378
Target Start/End: Original strand, 236144 - 236207
Alignment:
Q  315 ctcaaccaatgttctcattgcatcttaaacctcttgaggtttgtagtaaatgagttcaaccctc 378  Q
    |||| ||||| ||||| |||| || |||||||| || || ||||||||||||||||||||||||    
T  236144 ctcagccaattttctcgttgcttcgtaaacctcatgtggcttgtagtaaatgagttcaaccctc 236207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 428
Target Start/End: Complemental strand, 32791312 - 32791269
Alignment:
Q  385 tgtgtgaggatctatgcattgcaggctcttgaagaactcagcat 428  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||||    
T  32791312 tgtgtgaggatctattcattgcatgctcttgaaaaactcagcat 32791269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 32791623 - 32791561
Alignment:
Q  81 acatagacctaattgtgacatagctctgttaaaaagtatccatgttaaatcgtccatgtggtga 144  Q
    ||||||||||||  |||||||||| |||||||||||||||  |||| || ||||||||||||||    
T  32791623 acatagacctaac-gtgacatagccctgttaaaaagtatctgtgttgaaacgtccatgtggtga 32791561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 21627964 - 21627911
Alignment:
Q  23 cgagcagttctttcaaccttccaccggaataaagttgagacagacagtcatgtg 76  Q
    |||||| |||| ||| ||||||||||| |||||||| ||||||||| |||||||    
T  21627964 cgagcaattctctcacccttccaccgggataaagttcagacagacattcatgtg 21627911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 115; Significance: 3e-58; HSPs: 5)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 81 - 375
Target Start/End: Original strand, 14422 - 14716
Alignment:
Q  81 acatagacctaattgtgacatagctctgttaaaaagtatccatgttaaatcgtccatgtggtgaacattttcttgcaaatgactcttaagcaacagatca 180  Q
    ||||| |||||||||||||||||| |||||| || |||||  |||| || ||||||||||||| |||||||||| |||||||||| ||||||||||||||    
T  14422 acatacacctaattgtgacatagccctgttagaatgtatctgtgttgaaacgtccatgtggtgcacattttctttcaaatgactcataagcaacagatca 14521  T
Q  181 cgggatttagtgaacacatcatgatgagactggtgatgtatgtgacaaagaattgcaagtgctttatcgtgctcatctccatatttgtatattagtaaca 280  Q
    |||| ||||| |||| |||||||| ||   ||||||| ||| | || ||| |||||| ||||||||  |   || ||| | |||||||| ||||||  ||    
T  14522 cggggtttagcgaactcatcatgaagaacatggtgatatatatcactaagcattgcacgtgctttagtgcagtcgtctgcgtatttgtagattagtgtca 14621  T
Q  281 ctaatccatccattaaggtcctactgttctctggctcaaccaatgttctcattgcatcttaaacctcttgaggtttgtagtaaatgagttcaacc 375  Q
    |||||  ||||||||||||||| || ||||| |||||| |||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||    
T  14622 ctaatatatccattaaggtcctgctattctccggctcagccaatgttctaattgcctcgtaaacatcttgaggtttgtagtaaatgagttcaacc 14716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 297 - 378
Target Start/End: Original strand, 12293 - 12374
Alignment:
Q  297 ggtcctactgttctctggctcaaccaatgttctcattgcatcttaaacctcttgaggtttgtagtaaatgagttcaaccctc 378  Q
    |||||| |||||||| || ||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  12293 ggtcctgctgttctccgggtcagccaatgttctcattgcctcttaaacctcttgagatttgtagtaaatgagttcaaccctc 12374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 81 - 180
Target Start/End: Original strand, 12192 - 12291
Alignment:
Q  81 acatagacctaattgtgacatagctctgttaaaaagtatccatgttaaatcgtccatgtggtgaacattttcttgcaaatgactcttaagcaacagatca 180  Q
    |||||| ||||| | ||||||||| ||||||||| |||||  |||| || ||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  12192 acataggcctaactatgacatagccctgttaaaacgtatctgtgttgaaacgtccatgtggtgaacattttcttgcaaatgactcatgagcaacagatca 12291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 12111 - 12163
Alignment:
Q  24 gagcagttctttcaaccttccaccggaataaagttgagacagacagtcatgtg 76  Q
    ||||| ||||||||||||||||||||||||||||| |||| ||||||||||||    
T  12111 gagcaattctttcaaccttccaccggaataaagttcagactgacagtcatgtg 12163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 422
Target Start/End: Original strand, 14842 - 14880
Alignment:
Q  384 gtgtgtgaggatctatgcattgcaggctcttgaagaact 422  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  14842 gtgtgtgaggatctatgcgttgcaggctcttgaaaaact 14880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 81 - 311
Target Start/End: Original strand, 48300216 - 48300446
Alignment:
Q  81 acatagacctaattgtgacatagctctgttaaaaagtatccatgttaaatcgtccatgtggtgaacattttcttgcaaatgactcttaagcaacagatca 180  Q
    |||||||||||| ||||||||||| |||||||| ||||||  |||  ||  |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48300216 acatagacctaactgtgacatagccctgttaaagagtatctgtgtcgaaatgtccatgtggtgaacattttcttgcaaatgactcataagcaacagatca 48300315  T
Q  181 cgggatttagtgaacacatcatgatgagactggtgatgtatgtgacaaagaattgcaagtgctttatcgtgctcatctccatatttgtatattagtaaca 280  Q
    ||||     |  ||| ||||  || |||  ||||||| ||| | |||||| |||||  ||||||||  | |||||||||| ||||||||||||||| | |    
T  48300316 cgggcaactgcaaactcatctagaagagcatggtgatatatatcacaaagcattgcgcgtgctttagtgcgctcatctccgtatttgtatattagtgata 48300415  T
Q  281 ctaatccatccattaaggtcctactgttctc 311  Q
    | ||  |||||||||||||||| || |||||    
T  48300416 ccaacacatccattaaggtcctgctattctc 48300446  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 378
Target Start/End: Original strand, 48300569 - 48300633
Alignment:
Q  314 gctcaaccaatgttctcattgcatcttaaacctcttgaggtttgtagtaaatgagttcaaccctc 378  Q
    ||||| ||||| ||||| |||| || |||||||| || |||||||||||||||||||||||||||    
T  48300569 gctcagccaattttctcgttgcttcataaacctcatgtggtttgtagtaaatgagttcaaccctc 48300633  T

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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 85 - 302
Target Start/End: Complemental strand, 7390008 - 7389791
Alignment:
Q  85 agacctaattgtgacatagctctgttaaaaagtatccatgttaaatcgtccatgtggtgaacattttcttgcaaatgactcttaagcaacagatcacggg 184  Q
    |||||||| ||||||||||| ||||||||||||||   |||  ||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7390008 agacctaactgtgacatagccctgttaaaaagtatttgtgtcgaaatgtccatgtggtgaacattttcttgcaaatgactcataagcaacagatcacggg 7389909  T
Q  185 atttagtgaacacatcatgatgagactggtgatgtatgtgacaaagaattgcaagtgctttatcgtgctcatctccatatttgtatattagtaacactaa 284  Q
     |   |  ||| ||||| || |||  ||||||| ||| | |||||| |||||  ||||||||  | |||||||||| ||||| ||||| ||| | |||||    
T  7389908 ctactgcaaactcatcaagaagagcatggtgatatatatcacaaagcattgcgcgtgctttagtgcgctcatctccgtatttatatatcagtgatactaa 7389809  T
Q  285 tccatccattaaggtcct 302  Q
      ||||||||||||||||    
T  7389808 cacatccattaaggtcct 7389791  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 7389661 - 7389598
Alignment:
Q  315 ctcaaccaatgttctcattgcatcttaaacctcttgaggtttgtagtaaatgagttcaaccctc 378  Q
    |||| ||||| ||||| |||| || |||||||| || |||||||||||||||||||||||||||    
T  7389661 ctcagccaattttctcgttgcttcgtaaacctcatgtggtttgtagtaaatgagttcaaccctc 7389598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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