View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9362_low_4 (Length: 290)
Name: NF9362_low_4
Description: NF9362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9362_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 18579925 - 18579653
Alignment:
| Q |
1 |
gcagaatatcagaatctgttatttccttcccatgagagtgaaatctcaagttctttagaagttgtaggatattgcatctcatcaattgccacaaatatgc |
100 |
Q |
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| T |
18579925 |
gcagaatatcagaatcagttatttccttcccatgagagtgaaatctcaagttctttagaagttgtaggatattgcatctcatcaattgccacaaatatgc |
18579826 |
T |
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| Q |
101 |
taaaataaaaaatcaatcataatggtttcgacaatgttaacaccatctaacatcttatgaaacactgacacaaacacgtacaccaga-----cactgcac |
195 |
Q |
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| T |
18579825 |
taaaataaaaaatcaatcataatggtttcgacaatgttaataccatctaacatcttatgaaacactgacacaaatacgtacaccagacactacactacac |
18579726 |
T |
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| Q |
196 |
tacactaacactcgtaataatttgnnnnnnnttgaacaattgattgtaacctgtcggtgtctaacacaatgtc |
268 |
Q |
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| T |
18579725 |
tacactaacactcgtaataatttgaaaaaaatggaacaattgattgtaacctgtcggtgtctaacacaatgtc |
18579653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 3089591 - 3089690
Alignment:
| Q |
5 |
aatatcagaatctgttatttccttcccatgagagtgaaatctcaagttctttagaagttgtaggatattgcatctcatcaattgccacaaatatgctaaa |
104 |
Q |
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|||||||| ||| |||||||||||||| ||| |||||||| |||||||||||||||||||||||| ||| ||| |||||||||||||| ||| |||||| |
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| T |
3089591 |
aatatcagcatcagttatttccttcccgcgagcgtgaaatcgcaagttctttagaagttgtaggatgttgtatcgcatcaattgccacagataagctaaa |
3089690 |
T |
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