View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9363_high_7 (Length: 383)
Name: NF9363_high_7
Description: NF9363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9363_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 49 - 374
Target Start/End: Complemental strand, 35040969 - 35040644
Alignment:
| Q |
49 |
aaatgcaactttgtaggcaccaaagttttccaaggtcggtacaccaaagccacaaagttactatcaaattttgcaatatagcaaaaattggagaacaaga |
148 |
Q |
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| T |
35040969 |
aaatgcaactttgtaggcaccaaagttttccaaggtcggtacaccaaagccacaaagttactatcaaattctgcaatatagcaaaaattggagaacaaga |
35040870 |
T |
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| Q |
149 |
actatgcttgtacttgcatttatttggcacaacgttgaagattaattttgtgacttaacctagagtattaattttgactaaaagcttcggtagacaaacg |
248 |
Q |
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| T |
35040869 |
actatgcttgtacttgcatttaattggcacaacgttgaagattaattttgtgacttaacctagagcattaattttgactaaaagcttcggtagacaaacg |
35040770 |
T |
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| Q |
249 |
tggagtaagaatgacttcaagtggagaggctttgattgtggtgagtccgctttgttcaaccatatcaactggtcctccatctttagtcacaatgtcaaat |
348 |
Q |
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| T |
35040769 |
tggagtaagaatgacttcaagtggagaggctttgattgtggtgagtccgctttgttcaaccatatcaactggtcctccatctttagtcacaatgtcaaac |
35040670 |
T |
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| Q |
349 |
ccatgcaataaagtagcaagtattat |
374 |
Q |
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| T |
35040669 |
ccatgcaataaagtagcaagtgttat |
35040644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 241 - 374
Target Start/End: Complemental strand, 35048399 - 35048266
Alignment:
| Q |
241 |
gacaaacgtggagtaagaatgacttcaagtggagaggctttgattgtggtgagtccgctttgttcaaccatatcaactggtcctccatctttagtcacaa |
340 |
Q |
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| T |
35048399 |
gacaaacgtggagtaagaatgacttctagaggagatgctttgacgttggtcagtccactttgttcaaccataccaactggtcctccatcttgagtcacta |
35048300 |
T |
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| Q |
341 |
tgtcaaatccatgcaataaagtagcaagtattat |
374 |
Q |
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| T |
35048299 |
tatcaaatccatgcaacaaagttgcaagtgttat |
35048266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 374
Target Start/End: Complemental strand, 35026814 - 35026681
Alignment:
| Q |
241 |
gacaaacgtggagtaagaatgacttcaagtggagaggctttgattgtggtgagtccgctttgttcaaccatatcaactggtcctccatctttagtcacaa |
340 |
Q |
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| T |
35026814 |
gacaaacgtggactaaggatgacttgtagaggagaagctttgatgttggtcattccacttatttcaaccatatcaaccggtcctccatctgaagtcacta |
35026715 |
T |
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| Q |
341 |
tgtcaaatccatgcaataaagtagcaagtattat |
374 |
Q |
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| T |
35026714 |
tgtcaaacccatgcaacaatgtagcaagtgttat |
35026681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 369
Target Start/End: Complemental strand, 35032760 - 35032632
Alignment:
| Q |
241 |
gacaaacgtggagtaagaatgacttcaagtggagaggctttgattgtggtgagtccgctttgttcaaccatatcaactggtcctccatctttagtcacaa |
340 |
Q |
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|||||||| ||| |||||||||||| | ||||||||||||| |||| |||| | ||||||||||||| ||||||||||||||||| |||||| | |
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| T |
35032760 |
gacaaacgcggattaagaatgacttgtaaaggagaggctttgacattggtcagtctacagtgttcaaccatattaactggtcctccatcttgagtcacta |
35032661 |
T |
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| Q |
341 |
tgtcaaatccatgcaataaagtagcaagt |
369 |
Q |
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||| ||| |||||||| || | ||||||| |
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| T |
35032660 |
tgttaaacccatgcaacaatgcagcaagt |
35032632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 35041029 - 35040995
Alignment:
| Q |
16 |
aaattgttcactgaatcacaccccatacctacaaa |
50 |
Q |
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| T |
35041029 |
aaattgttcactgaatcacaccccatacctacaaa |
35040995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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