View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9363_high_8 (Length: 364)
Name: NF9363_high_8
Description: NF9363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9363_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 42 - 348
Target Start/End: Complemental strand, 30238675 - 30238367
Alignment:
| Q |
42 |
ctatgtaacacaataattgccaccttatgttttcataaatagtattttctaatgtattgaaggtatattgaagaagtcgatctcatgagatttttgaaga |
141 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30238675 |
ctatgtaacacagtaatttccaccttatgttttcataaatagtattttctaatgtattgaaggtatattgaagaagtcgatctcatgagatttttgaaga |
30238576 |
T |
|
| Q |
142 |
gggttgagatacacaccatatttccactctttgaaggtgctcttgaaactgggaagattagcagatcttcctttagaaattgggtggtaagtcttgcttg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30238575 |
gggttgagatacacaccatatttccactctttgaaggtgcccttgaaactgggaagattagcagatcttcctttagaaattgggtggtaagtcttgcttg |
30238476 |
T |
|
| Q |
242 |
aaaatttatcacttgtgaatatcaatttgtgtcac--nnnnnnnnacaatagttatttatcaaattaattaatggtcattgaatttgtaatcagattcga |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30238475 |
aaaatttatcacttgtgaatatcaatttgtgtcactttttttattacaatagttatttatcaaattaattaatggtcattgaatttgtaatcagattcga |
30238376 |
T |
|
| Q |
340 |
gcttattat |
348 |
Q |
| |
|
||||||||| |
|
|
| T |
30238375 |
gcttattat |
30238367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30238771 - 30238731
Alignment:
| Q |
1 |
atgattagttgtgtcttggtttcgtgaaacaatatcgatgt |
41 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30238771 |
atgattagttgtgtcttggtttcgtaaaacaatatcgatgt |
30238731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University