View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9363_low_1 (Length: 519)

Name: NF9363_low_1
Description: NF9363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9363_low_1
NF9363_low_1
[»] chr8 (24 HSPs)
chr8 (2-265)||(26274494-26274757)
chr8 (262-491)||(26268395-26268627)
chr8 (261-493)||(33032436-33032673)
chr8 (262-493)||(17799587-17799823)
chr8 (376-493)||(23179724-23179842)
chr8 (376-493)||(21033771-21033889)
chr8 (376-493)||(590695-590813)
chr8 (376-493)||(9021270-9021388)
chr8 (376-493)||(29554948-29555066)
chr8 (384-493)||(28895411-28895521)
chr8 (370-493)||(30423106-30423231)
chr8 (376-493)||(3276245-3276363)
chr8 (394-491)||(25684562-25684660)
chr8 (370-493)||(2267186-2267311)
chr8 (394-493)||(16752685-16752785)
chr8 (394-493)||(16757430-16757530)
chr8 (394-493)||(28327827-28327927)
chr8 (394-493)||(4812650-4812750)
chr8 (401-493)||(28332557-28332650)
chr8 (376-488)||(15949435-15949548)
chr8 (436-491)||(17847640-17847695)
chr8 (376-470)||(15944774-15944869)
chr8 (433-474)||(33021079-33021120)
chr8 (437-493)||(6376104-6376160)
[»] chr1 (12 HSPs)
chr1 (264-493)||(4144846-4145080)
chr1 (370-493)||(25133966-25134090)
chr1 (376-493)||(9526367-9526485)
chr1 (376-493)||(21353509-21353627)
chr1 (384-493)||(2393445-2393555)
chr1 (370-493)||(3091269-3091394)
chr1 (384-493)||(9521624-9521734)
chr1 (370-493)||(14996935-14997059)
chr1 (394-493)||(2232516-2232616)
chr1 (411-493)||(2401384-2401467)
chr1 (376-488)||(46783044-46783157)
chr1 (293-347)||(2393578-2393632)
[»] chr6 (23 HSPs)
chr6 (353-493)||(19702025-19702167)
chr6 (376-493)||(13467626-13467744)
chr6 (376-493)||(22352015-22352133)
chr6 (376-493)||(3577677-3577795)
chr6 (376-493)||(17695014-17695132)
chr6 (384-493)||(26643085-26643195)
chr6 (384-493)||(26749051-26749161)
chr6 (376-493)||(33215728-33215846)
chr6 (394-493)||(17035974-17036074)
chr6 (376-490)||(22342967-22343082)
chr6 (376-493)||(25466062-25466180)
chr6 (394-493)||(13878646-13878746)
chr6 (394-493)||(13883394-13883494)
chr6 (394-493)||(16785838-16785938)
chr6 (394-493)||(26887387-26887487)
chr6 (394-493)||(31248877-31248977)
chr6 (394-493)||(35201489-35201589)
chr6 (384-493)||(25941554-25941663)
chr6 (411-493)||(12166309-12166393)
chr6 (370-475)||(5165997-5166102)
chr6 (376-493)||(24542837-24542954)
chr6 (309-347)||(5166111-5166149)
chr6 (353-389)||(12166389-12166425)
[»] chr4 (28 HSPs)
chr4 (262-493)||(13072144-13072361)
chr4 (376-493)||(15831042-15831160)
chr4 (376-493)||(18586867-18586985)
chr4 (353-493)||(36771273-36771415)
chr4 (353-493)||(47566370-47566512)
chr4 (370-493)||(25699644-25699768)
chr4 (376-493)||(8529168-8529286)
chr4 (353-493)||(36769356-36769498)
chr4 (353-493)||(4558188-4558330)
chr4 (384-493)||(15312225-15312335)
chr4 (376-493)||(31300325-31300443)
chr4 (370-493)||(4569989-4570113)
chr4 (370-493)||(16489244-16489368)
chr4 (376-493)||(4556222-4556340)
chr4 (376-493)||(4884775-4884893)
chr4 (370-493)||(16638721-16638846)
chr4 (376-493)||(15316859-15316977)
chr4 (376-493)||(16689103-16689221)
chr4 (394-493)||(55822184-55822284)
chr4 (403-493)||(7050420-7050511)
chr4 (394-493)||(11853468-11853568)
chr4 (386-493)||(25614083-25614191)
chr4 (401-488)||(26557664-26557752)
chr4 (437-493)||(16185999-16186055)
chr4 (384-493)||(4874642-4874752)
chr4 (292-347)||(4558109-4558164)
chr4 (436-493)||(3982342-3982398)
chr4 (283-347)||(18537776-18537839)
[»] chr2 (22 HSPs)
chr2 (370-493)||(17943432-17943556)
chr2 (376-493)||(27517802-27517920)
chr2 (370-493)||(38190892-38191016)
chr2 (376-493)||(17932535-17932653)
chr2 (376-493)||(20050185-20050303)
chr2 (376-493)||(22712679-22712797)
chr2 (376-493)||(30478895-30479013)
chr2 (376-493)||(37170915-37171033)
chr2 (370-493)||(12781384-12781508)
chr2 (376-493)||(33674568-33674686)
chr2 (376-475)||(35894442-35894542)
chr2 (376-493)||(20054928-20055046)
chr2 (384-493)||(22717388-22717498)
chr2 (394-493)||(17462355-17462455)
chr2 (394-493)||(39686902-39687002)
chr2 (394-493)||(45567328-45567428)
chr2 (394-493)||(2736124-2736224)
chr2 (394-493)||(2740860-2740960)
chr2 (394-493)||(39679964-39680064)
chr2 (448-493)||(28458992-28459037)
chr2 (436-493)||(33603956-33604013)
chr2 (438-493)||(20589727-20589782)
[»] chr7 (26 HSPs)
chr7 (359-493)||(21369525-21369661)
chr7 (370-493)||(25410025-25410149)
chr7 (370-493)||(25351248-25351372)
chr7 (370-493)||(25356942-25357066)
chr7 (370-493)||(44016824-44016949)
chr7 (376-493)||(7464681-7464799)
chr7 (376-493)||(34547026-34547144)
chr7 (376-493)||(42006564-42006682)
chr7 (370-493)||(44144029-44144153)
chr7 (384-493)||(8378667-8378777)
chr7 (376-493)||(30246871-30246989)
chr7 (376-493)||(44512688-44512806)
chr7 (370-493)||(44010913-44011038)
chr7 (384-493)||(2120807-2120918)
chr7 (391-491)||(1099599-1099700)
chr7 (394-493)||(7069699-7069799)
chr7 (394-493)||(7074706-7074806)
chr7 (394-493)||(15541158-15541258)
chr7 (394-493)||(25405312-25405412)
chr7 (395-493)||(3320213-3320312)
chr7 (395-493)||(3324961-3325060)
chr7 (384-475)||(6067381-6067474)
chr7 (431-473)||(1099717-1099759)
chr7 (292-347)||(44011047-44011102)
chr7 (292-347)||(44016958-44017013)
chr7 (424-493)||(12310179-12310243)
[»] chr3 (33 HSPs)
chr3 (376-491)||(10896906-10897022)
chr3 (376-493)||(5858447-5858565)
chr3 (376-493)||(10612941-10613059)
chr3 (376-493)||(29914116-29914234)
chr3 (376-493)||(47878334-47878452)
chr3 (366-493)||(38002760-38002888)
chr3 (370-493)||(47883045-47883169)
chr3 (382-493)||(11079424-11079536)
chr3 (382-493)||(27762149-27762261)
chr3 (376-493)||(54193126-54193245)
chr3 (353-489)||(3329770-3329908)
chr3 (376-493)||(4535515-4535633)
chr3 (376-493)||(22626147-22626265)
chr3 (370-493)||(10949423-10949546)
chr3 (384-493)||(16462112-16462222)
chr3 (370-489)||(10595201-10595321)
chr3 (376-493)||(54188409-54188528)
chr3 (376-493)||(20031481-20031595)
chr3 (394-493)||(6303229-6303329)
chr3 (394-493)||(10094237-10094337)
chr3 (394-493)||(10100254-10100354)
chr3 (394-493)||(10201117-10201217)
chr3 (394-493)||(27544192-27544292)
chr3 (394-493)||(10208163-10208263)
chr3 (370-493)||(13893356-13893481)
chr3 (370-493)||(7417964-7418083)
chr3 (384-493)||(16996784-16996894)
chr3 (280-347)||(7417666-7417732)
chr3 (376-431)||(48390446-48390501)
chr3 (433-474)||(42297838-42297879)
chr3 (436-475)||(15823791-15823830)
chr3 (436-475)||(27703351-27703390)
chr3 (436-488)||(26763000-26763052)
[»] scaffold0256 (1 HSPs)
scaffold0256 (376-493)||(16226-16344)
[»] scaffold0004 (1 HSPs)
scaffold0004 (376-493)||(188405-188523)
[»] chr5 (22 HSPs)
chr5 (376-493)||(1240329-1240447)
chr5 (376-493)||(22672735-22672853)
chr5 (262-490)||(11962599-11962814)
chr5 (377-493)||(31782620-31782738)
chr5 (384-493)||(2298164-2298274)
chr5 (384-493)||(25452404-25452514)
chr5 (384-493)||(40222672-40222782)
chr5 (376-469)||(42238204-42238298)
chr5 (385-493)||(35385615-35385724)
chr5 (370-493)||(10627257-10627383)
chr5 (370-493)||(16093454-16093578)
chr5 (376-493)||(28786307-28786423)
chr5 (384-475)||(25445401-25445493)
chr5 (377-493)||(17841412-17841530)
chr5 (259-392)||(20718356-20718491)
chr5 (394-493)||(1170730-1170830)
chr5 (370-493)||(26406636-26406760)
chr5 (370-487)||(25838002-25838120)
chr5 (441-493)||(4897792-4897844)
chr5 (279-347)||(34034589-34034655)
chr5 (437-493)||(15445434-15445493)
chr5 (441-489)||(25562458-25562506)
[»] scaffold0209 (1 HSPs)
scaffold0209 (376-493)||(17149-17267)
[»] scaffold0131 (1 HSPs)
scaffold0131 (394-493)||(31060-31160)
[»] scaffold0006 (1 HSPs)
scaffold0006 (394-493)||(224738-224838)
[»] scaffold1764 (1 HSPs)
scaffold1764 (384-430)||(1345-1391)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 2 - 265
Target Start/End: Complemental strand, 26274757 - 26274494
Alignment:
Q  2 tcgagtttggtggtactgtttagagtaaataatgtgcttcccattcttccacacgggatatcgtggccagctctaaataactttcactgtgccgttgatt 101  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26274757 tcgagtttgatggtactgtttagagtaaataatgtgcttcccattcttccacacgggatatcgtggccagctctaaataactttcactgtgccgttgatt 26274658  T
Q  102 ttttaccttatttcgttggtttggtcactccttccaatgcgtcaattcagtggaaaggagcttgtttctatgaaaatagagggatgcgtaatgaactctc 201  Q
    | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  26274657 tgttaccttatttcgttggtttggtcactccttccaatgcttcaattcagtggaaaggagcttgtttctatgaaaatagagggatgtgtaatgaactctc 26274558  T
Q  202 tttgggtggtgacattctttatctcagggtattttccccttctttcagtccttaatttacagaa 265  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  26274557 tttgggtggtgacattctctatctcagggtattttccccttctttcagtccttaatttatagaa 26274494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 262 - 491
Target Start/End: Complemental strand, 26268627 - 26268395
Alignment:
Q  262 agaaaaaacagattgtatttttgggcatgattttgttcctttttataagggatgttttccactataaatataaatcttgtatca--gaatatggtgtaga 359  Q
    |||||||||| || |||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||  ||||||||||||||    
T  26268627 agaaaaaacatatcgtatttttgggcctgattttgttcctttttatgagggatgttttccactgtaaatataaaccttgtatcaatgaatatggtgtaga 26268528  T
Q  360 aacaaaacactgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgtttt 458  Q
    ||||||| | ||||||||||| | |||||||||||| ||||||||||||| ||||||||| || ||||||| ||||||||||||| |||| |||||||||    
T  26268527 aacaaaataatgtgtaaaaaacaaggtttagaagcctacatacaaactagggtttatagagaatttctcttggcaacaacactagagttgagattgtttt 26268428  T
Q  459 gattcaccttgaacaaatcaccattaggattga 491  Q
    ||||||||||||||||| ||| |||| ||||||    
T  26268427 gattcaccttgaacaaaacactattaagattga 26268395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 261 - 493
Target Start/End: Original strand, 33032436 - 33032673
Alignment:
Q  261 cagaaaaaacagattgtatttttgggcatgattttgttcctttttataagggatgttttccactataaatataaatcttgtatcagaatatg----gtgt 356  Q
    |||||||||||||| |||||||||||  ||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| |||  ||     ||||    
T  33032436 cagaaaaaacagatcgtatttttgggtctgattttgttcctttttatgagggatgctttccactataaatataaaccttgtattagatgattacgtgtgt 33032535  T
Q  357 agaaacaaaacactgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgt 455  Q
    |||||||||||| |||||| |||| | |||||||||||||||||||||||||| ||||||||| || ||||||| |||||||||||||||||| ||||||    
T  33032536 agaaacaaaacattgtgtagaaaacatggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgagattgt 33032635  T
Q  456 tttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  33032636 tttgattcaccttgaacaaagcactattaggattgagt 33032673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 262 - 493
Target Start/End: Complemental strand, 17799823 - 17799587
Alignment:
Q  262 agaaaaaacagattgtatttttgggcatgattttgttcctttttataagggatgttttccactataaatataaatcttgtatcagaa---tatg-gtgta 357  Q
    |||||| |||||| |||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||| ||| |||||||    |||| |||||    
T  17799823 agaaaatacagatcgtatttttgggcctgattttgttcctttttatgagggatgctttccactataaatataaaccttatatcagatgattatgtgtgta 17799724  T
Q  358 gaaacaaaacactgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgtt 456  Q
    ||||||||||||| |||| |||| ||||||||||||||||||||||||||||  |||||||| || || ||| | |||||||||||||||||||||||||    
T  17799723 gaaacaaaacactatgtagaaaacagggtttagaagccaacatacaaactaggatttatagagaatttgtctaggcaacaacactagggttgggattgtt 17799624  T
Q  457 ttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  17799623 ttgattcaccttgaacaaaacactattaggattgagt 17799587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 23179842 - 23179724
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23179842 aaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcaccttgaacaa 23179743  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  23179742 agcactattaggattgagt 23179724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 21033771 - 21033889
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  21033771 aaaaacagggtttagaagccaacatacaaactagggtttatagataatttctcttggcaacaacactaggcttgggattgttttgattcaccttgaacaa 21033870  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  21033871 aacactattaggattgagt 21033889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 590695 - 590813
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||| || |||||||| |||||||||| ||||||||||||||||||||||||||||||||    
T  590695 aaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaacacttgggttgggattgttttgattcaccttgaacaa 590794  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  590795 agcactattaggattgagt 590813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 9021388 - 9021270
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  9021388 aaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctctttgcaacaacactagggttcggattgttttgattcaccttgaacaa 9021289  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  9021288 aacactattaggattgagt 9021270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 29555066 - 29554948
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| ||| |||||||||||| |||| |||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29555066 aaaaacagggtttagaaaccatcatacaaactagggtttttagagaatttctcttggcaacaacactagggttgggattgttttgattcaccttgaacaa 29554967  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  29554966 agcactattaggattgagt 29554948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 384 - 493
Target Start/End: Original strand, 28895411 - 28895521
Alignment:
Q  384 ggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccat 482  Q
    ||||||||| |||||||||||||||| ||||||||| || |||||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||| ||    
T  28895411 ggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaactctagggttgagattgttttgattcaccttgaacaaaacactat 28895510  T
Q  483 taggattgagt 493  Q
    |||||||||||    
T  28895511 taggattgagt 28895521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 370 - 493
Target Start/End: Original strand, 30423106 - 30423231
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaac-aacactagggttgggattgttttgattcacct 467  Q
    |||||| |||| |||||||||||||||||| ||||||||| ||||||||| || ||||||| ||||| |||||||||| || ||||||||||||||||||    
T  30423106 tgtgtagaaaacagggtttagaagccaacaaacaaactagggtttatagagaatttctcttggcaacaaacactagggctgagattgttttgattcacct 30423205  T
Q  468 tgaacaaatcaccattaggattgagt 493  Q
    |||||||| |||  ||||||||||||    
T  30423206 tgaacaaaacacttttaggattgagt 30423231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 3276245 - 3276363
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| |||||||||||||||||| | ||||||| ||||||||| || || |||| |||||||| | ||||||||||||||||||||| |||||||||||    
T  3276245 aaaaacagggtttagaagccaacacaaaaactagggtttatagagaatttttctttgcaacaactccagggttgggattgttttgatttaccttgaacaa 3276344  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  3276345 agcactattaggattgagt 3276363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 394 - 491
Target Start/End: Original strand, 25684562 - 25684660
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattga 491  Q
    |||||| ||||||||| ||||||||| ||  |||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25684562 ccaacaaacaaactagggtttatagagaatctctcttagcaacaactctagggttgggattgttttgattcaccttgaacaaatcactattaggattga 25684660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 370 - 493
Target Start/End: Complemental strand, 2267311 - 2267186
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaac-aacactagggttgggattgttttgattcacct 467  Q
    |||||| |||| | |||||||||||||||||||||||||| ||||||||| || ||||||| ||||| ||||||| ||||| |||||||||||||||| |    
T  2267311 tgtgtagaaaacatggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaaacactacggttgagattgttttgattcacgt 2267212  T
Q  468 tgaacaaatcaccattaggattgagt 493  Q
    |||||||| |||  ||||||||||||    
T  2267211 tgaacaaaacactgttaggattgagt 2267186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 16752785 - 16752685
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  16752785 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 16752686  T
Q  493 t 493  Q
    |    
T  16752685 t 16752685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 16757530 - 16757430
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  16757530 ccaacaaacaaactagggtttatagagaatctctcttgacaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 16757431  T
Q  493 t 493  Q
    |    
T  16757430 t 16757430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 28327827 - 28327927
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  28327827 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 28327926  T
Q  493 t 493  Q
    |    
T  28327927 t 28327927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 4812750 - 4812650
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||| ||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  4812750 ccaacaaacaaactagggttcatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 4812651  T
Q  493 t 493  Q
    |    
T  4812650 t 4812650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 401 - 493
Target Start/End: Original strand, 28332557 - 28332650
Alignment:
Q  401 acaaactagcgtttatagaaaaattctcttgc-aacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    ||||||||| ||||||| | ||  |||||||  |||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  28332557 acaaactagggtttataaagaatctctcttggtaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgagt 28332650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 376 - 488
Target Start/End: Original strand, 15949435 - 15949548
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaa-cactagggttgggattgttttgattcaccttgaaca 473  Q
    ||||| |||||||| ||||||||| ||||||||| ||||| ||| || |||||||  |||||| ||||||| ||| |||||||| |||||||||||||||    
T  15949435 aaaaacagggtttaaaagccaacacacaaactagggtttacagagaa-ttctctttacaacaaacactaggtttgtgattgtttggattcaccttgaaca 15949533  T
Q  474 aatcaccattaggat 488  Q
    || ||| ||||||||    
T  15949534 aaacactattaggat 15949548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 436 - 491
Target Start/End: Original strand, 17847640 - 17847695
Alignment:
Q  436 aacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattga 491  Q
    ||||||| ||||||||||||||||||||||||||||| || ||| |||||||||||    
T  17847640 aacactatggttgggattgttttgattcaccttgaacgaaacactattaggattga 17847695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 470
Target Start/End: Original strand, 15944774 - 15944869
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaac-aacactagggttgggattgttttgattcaccttga 470  Q
    ||||| ||||||||||||| |||| ||||| ||| ||||||||| ||| |||||| ||||| ||||||||||||  ||||| |||||||||||||||    
T  15944774 aaaaacagggtttagaagctaacaaacaaattagggtttatagagaaa-tctcttggcaacaaacactagggttctgattgctttgattcaccttga 15944869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 474
Target Start/End: Complemental strand, 33021120 - 33021079
Alignment:
Q  433 aacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    |||||||||||| ||| |||||||||||||||||||||||||    
T  33021120 aacaacactaggattgagattgttttgattcaccttgaacaa 33021079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 493
Target Start/End: Original strand, 6376104 - 6376160
Alignment:
Q  437 acactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    ||||||| ||| | ||||||||||||||||||||||||| |||  ||| ||||||||    
T  6376104 acactagagtttgaattgttttgattcaccttgaacaaaacactgttaagattgagt 6376160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 3e-71; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 264 - 493
Target Start/End: Complemental strand, 4145080 - 4144846
Alignment:
Q  264 aaaaaacagattgtatttttgggcatgattttgttcctttttataagggatgttttccactataaatataaatcttgtatcagaa---tatgg-tgtaga 359  Q
    |||||||| || |||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||    ||||  ||||||    
T  4145080 aaaaaacatatcgtatttttgggcctgattttgttcctttttatgagggatgctttccactataaatataaaccttgtatcagatgattatgtatgtaga 4144981  T
Q  360 aacaaaacactgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgtttt 458  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||| || ||||||| |||| ||||||||||||| |||||||||    
T  4144980 aacaaaacactgtgtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaaaaacactagggttgagattgtttt 4144881  T
Q  459 gattcaccttgaacaaatcaccattaggattgagt 493  Q
    ||||||||||||||||| ||| |||||||||||||    
T  4144880 gattcaccttgaacaaaacactattaggattgagt 4144846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 370 - 493
Target Start/End: Original strand, 25133966 - 25134090
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcacctt 468  Q
    |||||| |||| |||||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||| ||||| |||||||||||||||||||    
T  25133966 tgtgtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaacactatggttgtgattgttttgattcacctt 25134065  T
Q  469 gaacaaatcaccattaggattgagt 493  Q
    ||||||||||| |||||||||||||    
T  25134066 gaacaaatcactattaggattgagt 25134090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 9526367 - 9526485
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||| || |||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  9526367 aaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaactctagggttgggattgttttgattcaccttgaacaa 9526466  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  9526467 agcactattaggattgagt 9526485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 21353627 - 21353509
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttgc-aacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| || ||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  21353627 aaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggtaacaacactagggttgggattgttttgattcaccttgaacaa 21353528  T
Q  475 atcaccattaggattgagt 493  Q
      ||| |||||||||||||    
T  21353527 cgcactattaggattgagt 21353509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 384 - 493
Target Start/End: Complemental strand, 2393555 - 2393445
Alignment:
Q  384 ggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccat 482  Q
    ||||||||||||||||| |||||||  ||||||||| || |||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||| ||    
T  2393555 ggtttagaagccaacatgcaaactaaggtttatagagaatttctcttggcaataacactagggttgggattgttttgattcaccttgaacaaagcactat 2393456  T
Q  483 taggattgagt 493  Q
    |||||||||||    
T  2393455 taggattgagt 2393445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 370 - 493
Target Start/End: Complemental strand, 3091394 - 3091269
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttgc-aacaa-cactagggttgggattgttttgattcacct 467  Q
    |||||| |||| |||||||||||||||||||||||||||| ||||||||| || ||||||||  ||||| ||||||||||| ||||||||||||||||||    
T  3091394 tgtgtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggtaacaaacactagggttgagattgttttgattcacct 3091295  T
Q  468 tgaacaaatcaccattaggattgagt 493  Q
    |||||||| ||||  |||||||||||    
T  3091294 tgaacaaaacaccgctaggattgagt 3091269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 384 - 493
Target Start/End: Original strand, 9521624 - 9521734
Alignment:
Q  384 ggtttagaagccaacatacaaactagcgtttatagaaaaattctcttgc-aacaacactagggttgggattgttttgattcaccttgaacaaatcaccat 482  Q
    ||||||||| |||||||||||||||| ||||||||| || ||||||||  ||||   |||||||||||||||||||||||||||||||||||| ||| ||    
T  9521624 ggtttagaaaccaacatacaaactagggtttatagagaatttctcttggtaacatttctagggttgggattgttttgattcaccttgaacaaagcactat 9521723  T
Q  483 taggattgagt 493  Q
    |||||||||||    
T  9521724 taggattgagt 9521734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 370 - 493
Target Start/End: Original strand, 14996935 - 14997059
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttgcaac--aacactagggttgggattgttttgattcacct 467  Q
    |||||| |||| |||||||||||||||||| ||||||||| ||||||| || ||||||||||  |   ||||||||||||||||||||||| ||||||||    
T  14996935 tgtgtagaaaacagggtttagaagccaacaaacaaactagggtttata-aagaattctcttggtaataaacactagggttgggattgtttttattcacct 14997033  T
Q  468 tgaacaaatcaccattaggattgagt 493  Q
    |||||||| |||  ||||||||||||    
T  14997034 tgaacaaaacactgttaggattgagt 14997059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 2232516 - 2232616
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| |||||||  ||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  2232516 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactttagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 2232615  T
Q  493 t 493  Q
    |    
T  2232616 t 2232616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 411 - 493
Target Start/End: Complemental strand, 2401467 - 2401384
Alignment:
Q  411 gtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    ||||||||| || |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||    
T  2401467 gtttatagagaatttctcttggcaacaacactagggttgagattgttttgattcaccttgaacaaagcactattaggattgagt 2401384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 376 - 488
Target Start/End: Original strand, 46783044 - 46783157
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaat-tctcttgcaacaa-cactagggttgggattgttttgattcaccttgaaca 473  Q
    |||||||||||||||||||||||| ||||||||  ||||||||| || | ||| ||||||||| ||||||||||| ||| ||||||||||||||||||||    
T  46783044 aaaaatagggtttagaagccaacaaacaaactatggtttatagagaattatct-ttgcaacaaacactagggttgagatcgttttgattcaccttgaaca 46783142  T
Q  474 aatcaccattaggat 488  Q
    || |||  |||||||    
T  46783143 aagcactgttaggat 46783157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 347
Target Start/End: Complemental strand, 2393632 - 2393578
Alignment:
Q  293 tttgttcctttttataagggatgttttccactataaatataaatcttgtatcaga 347  Q
    |||||||| | || |||||||| |||||||||||||||||||  |||||||||||    
T  2393632 tttgttccatattttaagggatattttccactataaatataagccttgtatcaga 2393578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 353 - 493
Target Start/End: Complemental strand, 19702167 - 19702025
Alignment:
Q  353 gtgtagaaacaaaacactgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaac-aacactagggttggg 450  Q
    ||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| || ||||||| ||||| |||||||||||||||    
T  19702167 gtgtagaaacaaaacactgtgtagaaaacaaggtttagaagccaacatacaaactagcgtttatagagaatttctcttggcaacaaacactagggttggg 19702068  T
Q  451 attgttttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  19702067 attgttttgattcaccttgaacaaagcactattaggattgagt 19702025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 13467744 - 13467626
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| || || |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13467744 aaaaacagggtttagaagccaacatacaaactagggtttatagagaatttatctttgcaacaacactagggttgggattgttttgattcaccttgaacaa 13467645  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  13467644 agcactattaggattgagt 13467626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 22352133 - 22352015
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  22352133 aaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgaatcaccttgaacaa 22352034  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  22352033 agcactattaggattgagt 22352015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 3577795 - 3577677
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| |||||||| || |||||||||||||||| ||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3577795 aaaaacagggtttaaaaaccaacatacaaactagggtttatagagaatttctctttgcaacaacactagggttgggattgttttgattcaccttgaacaa 3577696  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  3577695 aacactattaggattgagt 3577677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 17695132 - 17695014
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||| || |||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  17695132 aaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaaaactagggttgggattgttttgattcaccttgaacaa 17695033  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  17695032 agcactattaggattgagt 17695014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 384 - 493
Target Start/End: Original strand, 26643085 - 26643195
Alignment:
Q  384 ggtttagaagccaacatacaaactagcgtttatagaaaaattctcttgca-acaacactagggttgggattgttttgattcaccttgaacaaatcaccat 482  Q
    |||||||||||||||||||||||||| ||||||||| || |||||||||  |||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  26643085 ggtttagaagccaacatacaaactagggtttatagagaatttctcttgcccacaacactagggttgggattgttttgattcacctcgaacaaatcactat 26643184  T
Q  483 taggattgagt 493  Q
    |||||||||||    
T  26643185 taggattgagt 26643195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 384 - 493
Target Start/End: Original strand, 26749051 - 26749161
Alignment:
Q  384 ggtttagaagccaacatacaaactagcgtttatagaaaaattctcttgca-acaacactagggttgggattgttttgattcaccttgaacaaatcaccat 482  Q
    |||||||||||||||||||||||||| ||||||||| || |||||||||  |||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  26749051 ggtttagaagccaacatacaaactagggtttatagagaatttctcttgcccacaacactagggttgggattgttttgattcacctcgaacaaatcactat 26749150  T
Q  483 taggattgagt 493  Q
    |||||||||||    
T  26749151 taggattgagt 26749161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 33215728 - 33215846
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| || ||||||||||||||||||||||||| ||||||||| || ||||||| |||||||||||||||||| |||||||||||||||||||||| ||    
T  33215728 aaaaacagagtttagaagccaacatacaaactagggtttatagagaatttctctttgcaacaacactagggttgtgattgttttgattcaccttgaataa 33215827  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  33215828 agcactattaggattgagt 33215846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 17035974 - 17036074
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  17035974 ccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcaccttgaacaaagcactattaggattgag 17036073  T
Q  493 t 493  Q
    |    
T  17036074 t 17036074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 376 - 490
Target Start/End: Complemental strand, 22343082 - 22342967
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| ||  ||||||| ||||||||||||||||| ||||||||||||||| |||||||||    
T  22343082 aaaaacagggtttagaagccaacatacaaactagggtttatagagaatctctcttggcaacaacactagggttgagattgttttgattcaacttgaacaa 22342983  T
Q  475 atcaccattaggattg 490  Q
    | ||| ||||||||||    
T  22342982 agcactattaggattg 22342967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 25466180 - 25466062
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||| || |||||||| ||||||||||| ||||| |||||||||||||||||||||||||    
T  25466180 aaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaacactaaggttgagattgttttgattcaccttgaacaa 25466081  T
Q  475 atcaccattaggattgagt 493  Q
    | ||  |||||||||||||    
T  25466080 agcattattaggattgagt 25466062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 13878646 - 13878746
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  13878646 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 13878745  T
Q  493 t 493  Q
    |    
T  13878746 t 13878746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 13883394 - 13883494
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  13883394 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 13883493  T
Q  493 t 493  Q
    |    
T  13883494 t 13883494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 16785838 - 16785938
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  16785838 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 16785937  T
Q  493 t 493  Q
    |    
T  16785938 t 16785938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 26887487 - 26887387
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  26887487 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 26887388  T
Q  493 t 493  Q
    |    
T  26887387 t 26887387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 31248977 - 31248877
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  31248977 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 31248878  T
Q  493 t 493  Q
    |    
T  31248877 t 31248877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 35201589 - 35201489
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  35201589 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 35201490  T
Q  493 t 493  Q
    |    
T  35201489 t 35201489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 384 - 493
Target Start/End: Original strand, 25941554 - 25941663
Alignment:
Q  384 ggtttagaagccaacatacaaactagcgtttatagaaaaattctcttgc-aacaacactagggttgggattgttttgattcaccttgaacaaatcaccat 482  Q
    ||||||||| ||||||| |||||||| ||| ||||| || ||||||||  |||||| |||||||||||||||||||||||||||||||||||| ||  ||    
T  25941554 ggtttagaaaccaacattcaaactagggtt-atagagaatttctcttggtaacaactctagggttgggattgttttgattcaccttgaacaaagcattat 25941652  T
Q  483 taggattgagt 493  Q
    |||||||||||    
T  25941653 taggattgagt 25941663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 411 - 493
Target Start/End: Complemental strand, 12166393 - 12166309
Alignment:
Q  411 gtttatagaaaaattctcttg-caacaa-cactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    ||||||||| || |||||||| |||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  12166393 gtttatagagaatttctcttggcaacaaacactagggttgggattgttttgattcacgttgaacaaagcaccattaggattgagt 12166309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 370 - 475
Target Start/End: Complemental strand, 5166102 - 5165997
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctc-ttgcaacaacactagggttgggattgttttgattcacctt 468  Q
    |||||| |||| ||||||||||||||||||||||| |||| ||||||||| || |||||   |||| || ||||||||||||| ||||||||||||| ||    
T  5166102 tgtgtagaaaacagggtttagaagccaacatacaagctagggtttatagagaatttctcaaggcaagaatactagggttggga-tgttttgattcacttt 5166004  T
Q  469 gaacaaa 475  Q
    |||||||    
T  5166003 gaacaaa 5165997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 24542954 - 24542837
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaa-cactagggttgggattgttttgattcaccttgaaca 473  Q
    ||||||| ||||||||||||||||  |||||||  ||||||||| |  |||||||| |||||| |||||||||||||||||||||||||||||||||| |    
T  24542954 aaaaataaggtttagaagccaacac-caaactatggtttatagagat-ttctcttggcaacaaacactagggttgggattgttttgattcaccttgaata 24542857  T
Q  474 aatcaccattaggattgagt 493  Q
    || |||  ||||||| ||||    
T  24542856 aaacacttttaggatagagt 24542837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 5166149 - 5166111
Alignment:
Q  309 agggatgttttccactataaatataaatcttgtatcaga 347  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  5166149 agggatgttttccactataaatataagtcttgtatcaga 5166111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 353 - 389
Target Start/End: Complemental strand, 12166425 - 12166389
Alignment:
Q  353 gtgtagaaacaaaacactgtgtaaaaaatagggttta 389  Q
    ||||||||||||||||||||||| |||||||||||||    
T  12166425 gtgtagaaacaaaacactgtgtagaaaatagggttta 12166389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 5e-48; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 262 - 493
Target Start/End: Complemental strand, 13072361 - 13072144
Alignment:
Q  262 agaaaaaacagattgtatttttgggcatgattttgttcctttttataagggatgttttccactataaatataaatcttgtatcagaatatggtgtagaaa 361  Q
    |||||||||| || |||||||||||| ||||||||||||||||||| ||||||| ||||||||||| ||||||| |||||||||||      ||          
T  13072361 agaaaaaacaaatcgtatttttgggcttgattttgttcctttttatgagggatgctttccactatagatataaaccttgtatcaga------tg------ 13072274  T
Q  362 caaaacactgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttga 460  Q
       || | |||||| |||| | |||||||||||||||||||||||||| ||||||||| || |||||||| ||||| |||||||||||||||||||||||    
T  13072273 ---aatattgtgtagaaaacaaggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacatcactagggttgggattgttttga 13072177  T
Q  461 ttcaccttgaacaaatcaccattaggattgagt 493  Q
    ||||||||||||||||||| |||| ||||||||    
T  13072176 ttcaccttgaacaaatcactattatgattgagt 13072144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 15831042 - 15831160
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| |||||||||||||||| |||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15831042 aaaaacagggtttagaaaccaacatacaaactagggtttatagaaaatttttcttggcaacaacactagggttgggattgttttgattcaccttgaacaa 15831141  T
Q  475 atcaccattaggattgagt 493  Q
    ||||| |||||||||||||    
T  15831142 atcactattaggattgagt 15831160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 18586867 - 18586985
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18586867 aaaaatagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcaccttgaacaa 18586966  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  18586967 agcactattaggattgagt 18586985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 353 - 493
Target Start/End: Original strand, 36771273 - 36771415
Alignment:
Q  353 gtgtagaaacaaaacactgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaac-aacactagggttggg 450  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||  ||| || ||||||| ||||| ||||||||||||| |    
T  36771273 gtgtagaaacaaaacactgtgtagaaaatagggtttagaagccaacatacaaactagggtttgaagagaatttctcttggcaacaaacactagggttgag 36771372  T
Q  451 attgttttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    ||||||||||||||||||||||||| ||| |||| ||||||||    
T  36771373 attgttttgattcaccttgaacaaaacactattatgattgagt 36771415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 353 - 493
Target Start/End: Original strand, 47566370 - 47566512
Alignment:
Q  353 gtgtagaaacaaaacactgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaac-aacactagggttggg 450  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||| || || |||| ||||| ||||||||||||| |    
T  47566370 gtgtagaaacaaaacactgtgtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttatcttggcaacaaacactagggttgag 47566469  T
Q  451 attgttttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||    
T  47566470 attgttttgattcacattgaacaaagcactattaggattgagt 47566512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 370 - 493
Target Start/End: Original strand, 25699644 - 25699768
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcacctt 468  Q
    |||||| |||| |||||||| ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||    
T  25699644 tgtgtagaaaacagggtttaaaagccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcacctt 25699743  T
Q  469 gaacaaatcaccattaggattgagt 493  Q
    ||||||| ||| |||||||||||||    
T  25699744 gaacaaagcactattaggattgagt 25699768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 8529168 - 8529286
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  8529168 aaaaatagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaccactagggttgggattgttttgattcaccttgaacaa 8529267  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  8529268 agcactattaggattgagt 8529286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 353 - 493
Target Start/End: Original strand, 36769356 - 36769498
Alignment:
Q  353 gtgtagaaacaaaacactgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaac-aacactagggttggg 450  Q
    ||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| ||||  ||| || ||||||| ||||| |||||||||||||||    
T  36769356 gtgtagaaataaaacactgtgtaaaaaacaaggtttagaagccaacatacaaactagggtttgaagagaatttctcttggcaacaaacactagggttggg 36769455  T
Q  451 attgttttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    ||||||||||||||||||||||||| ||| |||||||| ||||    
T  36769456 attgttttgattcaccttgaacaaaacactattaggatcgagt 36769498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 353 - 493
Target Start/End: Original strand, 4558188 - 4558330
Alignment:
Q  353 gtgtagaaacaaaacactgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaac-aacactagggttggg 450  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||| || ||||||| ||||| |||||||||| ||||    
T  4558188 gtgtagaaacaaaacactgtgtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaaacactagggctggg 4558287  T
Q  451 attgttttgattcaccttgaacaaatcaccattaggattgagt 493  Q
     |  |||||||| |||||||||||| ||| |||||||||||||    
T  4558288 ttgtttttgatttaccttgaacaaagcactattaggattgagt 4558330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 384 - 493
Target Start/End: Original strand, 15312225 - 15312335
Alignment:
Q  384 ggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccat 482  Q
    ||||||||| |||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  15312225 ggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcaccttgaacaaagcactat 15312324  T
Q  483 taggattgagt 493  Q
    |||||||||||    
T  15312325 taggattgagt 15312335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 31300325 - 31300443
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| ||||||| |||||||| ||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31300325 aaaaacagggtttagaaaccaacattcaaactagggtttatagagaatttctctttgcaacaacactagggttgggattgttttgattcaccttgaacaa 31300424  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  31300425 agcactattaggattgagt 31300443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 370 - 493
Target Start/End: Original strand, 4569989 - 4570113
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcacctt 468  Q
    |||||| |||| || ||||||||||||||||||||||||| ||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||    
T  4569989 tgtgtagaaaacagagtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacatcactagggttgggattgttttgattcacctt 4570088  T
Q  469 gaacaaatcaccattaggattgagt 493  Q
    ||||||| ||| |||||||| ||||    
T  4570089 gaacaaaacactattaggatcgagt 4570113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 370 - 493
Target Start/End: Original strand, 16489244 - 16489368
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcacctt 468  Q
    |||||| |||| ||||||||||| |||||||||||||||| ||||||||| || |||||||| ||||||||||| ||||| |||||||||||||||||||    
T  16489244 tgtgtagaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaacactaaggttgagattgttttgattcacctt 16489343  T
Q  469 gaacaaatcaccattaggattgagt 493  Q
    ||||||| ||| |||||||||||||    
T  16489344 gaacaaagcactattaggattgagt 16489368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 4556340 - 4556222
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| ||||| |||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  4556340 aaaaacagggtttagaaaccaacttacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgtttcgattcaccttgaacaa 4556241  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  4556240 agcactattaggattgagt 4556222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 4884775 - 4884893
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||| || ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||    
T  4884775 aaaaacagggtttagaagccaacatacaaattagggtttatagagaatttctctttgcaacaacactgggggtgggattgttttgattcaccttgaacaa 4884874  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  4884875 agcactattaggattgagt 4884893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 370 - 493
Target Start/End: Original strand, 16638721 - 16638846
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaa-cactagggttgggattgttttgattcacct 467  Q
    |||||| |||| |||||||||||||||||||||||||||| ||||||||| || ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  16638721 tgtgtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctctttgcaacaaacactagggttgggattgttttgattcacct 16638820  T
Q  468 tgaacaaatcaccattaggattgagt 493  Q
    | |||||| |||  ||||||||||||    
T  16638821 taaacaaaacactgttaggattgagt 16638846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 15316859 - 15316977
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||| || |||||||| || ||||||||||||| |||||||||||||| |||||||||||    
T  15316859 aaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcagcaacactagggttcggattgttttgatttaccttgaacaa 15316958  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  15316959 agcactattaggattgagt 15316977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 16689221 - 16689103
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| ||||||| |||||||| ||||||||| || ||||||| |||||||| ||||| |||| ||||||||||||||||||||||||    
T  16689221 aaaaacagggtttagaaaccaacattcaaactagggtttatagataatttctctttgcaacaactctaggtttggaattgttttgattcaccttgaacaa 16689122  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  16689121 agcactattaggattgagt 16689103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 55822184 - 55822284
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||| ||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  55822184 ccaacaaacaaattagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 55822283  T
Q  493 t 493  Q
    |    
T  55822284 t 55822284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 403 - 493
Target Start/End: Complemental strand, 7050511 - 7050420
Alignment:
Q  403 aaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    ||||||| ||||||||| || |||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||| |||||||||||||    
T  7050511 aaactagggtttatagagaatttctcttggcaacaacactaaggttgtgattgttttgattcaccttgaacaaaacactattaggattgagt 7050420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 11853468 - 11853568
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| | ||||||| ||||||||| ||  ||||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||| ||||||||||||    
T  11853468 ccaacaaataaactagggtttatagagaatctctcttggcaacaactctagggttgagattgttttgattcaccttgaacaaaacactattaggattgag 11853567  T
Q  493 t 493  Q
    |    
T  11853568 t 11853568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 386 - 493
Target Start/End: Complemental strand, 25614191 - 25614083
Alignment:
Q  386 tttagaagccaacatacaaactagcgtttatagaaaaattctcttgc-aacaa-cactagggttgggattgttttgattcaccttgaacaaatcaccatt 483  Q
    ||||||||||||||||||| |||  ||||||||| || ||||||||  ||||| ||||||||||| |||||||||||||||| ||||||||| |||  ||    
T  25614191 tttagaagccaacatacaa-ctatggtttatagagaatttctcttggtaacaaacactagggttgagattgttttgattcacattgaacaaaacactgtt 25614093  T
Q  484 aggattgagt 493  Q
    || |||||||    
T  25614092 agaattgagt 25614083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 488
Target Start/End: Original strand, 26557664 - 26557752
Alignment:
Q  401 acaaactagcgtttatagaaaaattctcttg-caacaa-cactagggttgggattgttttgattcaccttgaacaaatcaccattaggat 488  Q
    ||||||||| ||||||||| |  |||||||| |||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||    
T  26557664 acaaactagggtttatagagat-ttctcttggcaacaaacactagggttgggattgttttgattcaccttaaacaaaacactattaggat 26557752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 437 - 493
Target Start/End: Complemental strand, 16186055 - 16185999
Alignment:
Q  437 acactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    |||||| |||||||||||||||||||||||||||||||| |||  ||||||||||||    
T  16186055 acactaaggttgggattgttttgattcaccttgaacaaaacactgttaggattgagt 16185999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 493
Target Start/End: Complemental strand, 4874752 - 4874642
Alignment:
Q  384 ggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caac-aacactagggttgggattgttttgattcaccttgaacaaatcacca 481  Q
    |||||||||||||||| |||||||||  |||| || | |||||||| | |||| |||||||| |||||| ||||||||||||||||||| |||| ||| |    
T  4874752 ggtttagaagccaacaaacaaactaggatttaaag-agaattctctagacaacaaacactagagttgggtttgttttgattcaccttgatcaaaacacta 4874654  T
Q  482 ttaggattgagt 493  Q
    ||| ||| ||||    
T  4874653 ttaagatagagt 4874642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 4558109 - 4558164
Alignment:
Q  292 ttttgttcctttttataagggatgttttccactataaatataaatcttgtatcaga 347  Q
    |||||||||  ||| | ||||||| |||||||||||||||||| ||||||||||||    
T  4558109 ttttgttccaatttttgagggatgctttccactataaatataagtcttgtatcaga 4558164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 493
Target Start/End: Complemental strand, 3982398 - 3982342
Alignment:
Q  436 aacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    ||||||||||||| ||||||||| |||||||||| | ||| ||| |||||||||||||    
T  3982398 aacactagggttgagattgtttttattcaccttggagaaa-cactattaggattgagt 3982342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 18537839 - 18537776
Alignment:
Q  283 tgggcatgattttgttcctttttataagggatgttttccactataaatataaatcttgtatcaga 347  Q
    ||||||||||||||||||  ||||| || |||| |||  |||||||||||| |||||||||||||    
T  18537839 tgggcatgattttgttccaatttatgagtgatgctttt-actataaatatagatcttgtatcaga 18537776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 5e-45; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 370 - 493
Target Start/End: Original strand, 17943432 - 17943556
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcacctt 468  Q
    |||||| ||||||||||||||||||||||||||||||||  ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||    
T  17943432 tgtgtagaaaatagggtttagaagccaacatacaaactatggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcacctt 17943531  T
Q  469 gaacaaatcaccattaggattgagt 493  Q
    ||||||||||| |||||||||||||    
T  17943532 gaacaaatcactattaggattgagt 17943556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 27517920 - 27517802
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27517920 aaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctctttgcaacaacactagggttgggattgttttgattcaccttgaacaa 27517821  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  27517820 agcactattaggattgagt 27517802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 370 - 493
Target Start/End: Original strand, 38190892 - 38191016
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcacctt 468  Q
    |||||| |||| |||||||||||||||||||||||||||| ||||||| | || |||||||| |||||||||||||||||||||||||||||||||||||    
T  38190892 tgtgtagaaaacagggtttagaagccaacatacaaactagggtttataaataatttctcttggcaacaacactagggttgggattgttttgattcacctt 38190991  T
Q  469 gaacaaatcaccattaggattgagt 493  Q
    ||||||| ||| |||| ||||||||    
T  38190992 gaacaaaacactattaagattgagt 38191016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 17932535 - 17932653
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| |||||||| || |||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17932535 aaaaacagggtttataaaccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcaccttgaacaa 17932634  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  17932635 agcactattaggattgagt 17932653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 20050303 - 20050185
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||| ||||| |||||||||||||||| |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  20050303 aaaaacagggtatagaaaccaacatacaaactagggtttatagaaaatttctctttgcaacaactctagggttgggattgttttgattcaccttgaacaa 20050204  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  20050203 aacactattaggattgagt 20050185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 22712797 - 22712679
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||| || |||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  22712797 aaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaactctagggttgggattgttttgattcaccttgaacaa 22712698  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  22712697 aacactattaggattgagt 22712679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 30478895 - 30479013
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| || |||||||| |||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30478895 aaaaacagagtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcaccttgaacaa 30478994  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  30478995 agcactattaggattgagt 30479013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 37171033 - 37170915
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||| ||||||||||||||||||| |||||||||||||    
T  37171033 aaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaacaccagggttgggattgttttgaatcaccttgaacaa 37170934  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  37170933 agcactattaggattgagt 37170915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 370 - 493
Target Start/End: Complemental strand, 12781508 - 12781384
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcacctt 468  Q
    |||||| |||| ||||||||||| ||||||| |||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||    
T  12781508 tgtgtagaaaacagggtttagaaaccaacattcaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcacctt 12781409  T
Q  469 gaacaaatcaccattaggattgagt 493  Q
     |||||| ||| |||||||||||||    
T  12781408 aaacaaagcactattaggattgagt 12781384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 33674686 - 33674568
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| |||||||| ||||||  ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33674686 aaaaacagggtttagaaaccaacatataaactatggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcaccttgaacaa 33674587  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  33674586 agcactattaggattgagt 33674568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 376 - 475
Target Start/End: Complemental strand, 35894542 - 35894442
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35894542 aaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcaccttgaacaa 35894443  T
Q  475 a 475  Q
    |    
T  35894442 a 35894442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 20055046 - 20054928
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||| ||||| |||||||||||||||  ||||||||| || ||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  20055046 aaaaacagggtatagaaaccaacatacaaactaaggtttatagagaatttctctttgcaacaactctagggttgggattgttttgattcaccttgaacaa 20054947  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  20054946 aacactattaggattgagt 20054928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 384 - 493
Target Start/End: Complemental strand, 22717498 - 22717388
Alignment:
Q  384 ggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgttttgattcaccttgaacaaatcaccat 482  Q
    ||||||||| |||||||||||||||| ||||| ||| || ||||||| ||||||||  ||||||||||||||||||||||||||||||||||| ||| ||    
T  22717498 ggtttagaaaccaacatacaaactagggtttacagagaatttctcttagcaacaactatagggttgggattgttttgattcaccttgaacaaaacactat 22717399  T
Q  483 taggattgagt 493  Q
    |||||||||||    
T  22717398 taggattgagt 22717388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 17462355 - 17462455
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  17462355 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 17462454  T
Q  493 t 493  Q
    |    
T  17462455 t 17462455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 39686902 - 39687002
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  39686902 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 39687001  T
Q  493 t 493  Q
    |    
T  39687002 t 39687002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 45567328 - 45567428
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  45567328 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 45567427  T
Q  493 t 493  Q
    |    
T  45567428 t 45567428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 2736124 - 2736224
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  2736124 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcacattgaacaaaacactattaggattgag 2736223  T
Q  493 t 493  Q
    |    
T  2736224 t 2736224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 2740860 - 2740960
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  2740860 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcacattgaacaaaacactattaggattgag 2740959  T
Q  493 t 493  Q
    |    
T  2740960 t 2740960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 39679964 - 39680064
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  39679964 ccaacaaacaaactagggtttatagagaatctcttttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 39680063  T
Q  493 t 493  Q
    |    
T  39680064 t 39680064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 448 - 493
Target Start/End: Complemental strand, 28459037 - 28458992
Alignment:
Q  448 gggattgttttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||    
T  28459037 gggattgttttgattcaccttgaacaaaacactattaggattgagt 28458992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 436 - 493
Target Start/End: Original strand, 33603956 - 33604013
Alignment:
Q  436 aacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    |||| ||||||||||||||||||||||||||||||||||| ||| ||||  |||||||    
T  33603956 aacattagggttgggattgttttgattcaccttgaacaaaacactattataattgagt 33604013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 493
Target Start/End: Original strand, 20589727 - 20589782
Alignment:
Q  438 cactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    ||||| ||||| |||||||||| ||||||||||||||| |||  ||||||||||||    
T  20589727 cactatggttgtgattgttttggttcaccttgaacaaaacactgttaggattgagt 20589782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 359 - 493
Target Start/End: Original strand, 21369525 - 21369661
Alignment:
Q  359 aaacaaaacactgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaac-aacactagggttgggattgtt 456  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| |||| |||||||| |||||||    
T  21369525 aaacaaaacactgtgtagaaaacagggtttagaagccaacatacaaactagggtttatagagaaattctcttggcaacaaacattagggttgagattgtt 21369624  T
Q  457 ttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  21369625 ttgattcaccttgaacaaaacactattaggattgagt 21369661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 370 - 493
Target Start/End: Original strand, 25410025 - 25410149
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcacctt 468  Q
    |||||| |||| |||||||||||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||    
T  25410025 tgtgtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcacctt 25410124  T
Q  469 gaacaaatcaccattaggattgagt 493  Q
    ||||||| ||| |||||||||||||    
T  25410125 gaacaaaacactattaggattgagt 25410149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 370 - 493
Target Start/End: Original strand, 25351248 - 25351372
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcacctt 468  Q
    |||||| |||| |||||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||||||||| |||||||||||||||||||    
T  25351248 tgtgtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgagattgttttgattcacctt 25351347  T
Q  469 gaacaaatcaccattaggattgagt 493  Q
    ||||||| ||| |||||||||||||    
T  25351348 gaacaaaacactattaggattgagt 25351372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 370 - 493
Target Start/End: Original strand, 25356942 - 25357066
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcacctt 468  Q
    |||||| |||| |||||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||||||||| |||||||||||||||||||    
T  25356942 tgtgtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgagattgttttgattcacctt 25357041  T
Q  469 gaacaaatcaccattaggattgagt 493  Q
    ||||||| ||| |||||||||||||    
T  25357042 gaacaaaacactattaggattgagt 25357066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 370 - 493
Target Start/End: Complemental strand, 44016949 - 44016824
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaa-cactagggttgggattgttttgattcacct 467  Q
    |||||| |||| |||||||||||||||||||||||||||| ||||||||| || |||||||| |||||| ||||||||||||||||||||||||||||||    
T  44016949 tgtgtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaaacactagggttgggattgttttgattcacct 44016850  T
Q  468 tgaacaaatcaccattaggattgagt 493  Q
    |||||||| ||| |||||||||||||    
T  44016849 tgaacaaagcactattaggattgagt 44016824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 7464799 - 7464681
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| |||||||| ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  7464799 aaaaacagggtttaaaagccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggtttggattgttttgattcaccttgaacaa 7464700  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  7464699 agcactattaggattgagt 7464681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 34547144 - 34547026
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  34547144 aaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcaccttgaacag 34547045  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  34547044 agcactattaggattgagt 34547026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 42006564 - 42006682
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| |||||||||||||||||| ||||||||  |||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  42006564 aaaaacagggtttagaagccaacaaacaaactatggtttatagaaaatttctcttggcaagaacactagggttgggattgttttgattcaccttgaacaa 42006663  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  42006664 aacactattaggattgagt 42006682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 370 - 493
Target Start/End: Complemental strand, 44144153 - 44144029
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcacctt 468  Q
    |||||| |||| | |||||||||||||||||||||||||| ||||||||| || || ||||| ||||||||||||||||  |||||||||||||||||||    
T  44144153 tgtgtagaaaacaaggtttagaagccaacatacaaactagggtttatagagaatttttcttggcaacaacactagggttatgattgttttgattcacctt 44144054  T
Q  469 gaacaaatcaccattaggattgagt 493  Q
    ||||||| ||| |||||||||||||    
T  44144053 gaacaaagcactattaggattgagt 44144029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 384 - 493
Target Start/End: Complemental strand, 8378777 - 8378667
Alignment:
Q  384 ggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccat 482  Q
    ||||||||| |||||||||||||||| ||||||||| || |||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||    
T  8378777 ggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactat 8378678  T
Q  483 taggattgagt 493  Q
    || ||||||||    
T  8378677 taagattgagt 8378667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 30246871 - 30246989
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||||||||||   ||||||| ||||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  30246871 aaaaacagggtttagaagccaacaacaaaactagggtttatagagaatttctcttggcaacaacactacggttgggattgttttgattcaccttgaacaa 30246970  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  30246971 agcactattaggattgagt 30246989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 44512806 - 44512688
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttgcaacaacactaggg-ttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||| || ||   ||||||||||||||||| |||||||||||||||||||||||||||||    
T  44512806 aaaaacagggtttagaaaccaacatacaaactagggtttatagagaattttctttgcaacaacactaggggttgggattgttttgattcaccttgaacaa 44512707  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  44512706 agcactattaggattgagt 44512688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 370 - 493
Target Start/End: Complemental strand, 44011038 - 44010913
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaa-cactagggttgggattgttttgattcacct 467  Q
    |||||| |||| |||||||||||||||||||||||||||  ||||||||| || || ||||| |||||| |||||||||||||||||||||||| |||||    
T  44011038 tgtgtagaaaacagggtttagaagccaacatacaaactatggtttatagagaatttttcttggcaacaaacactagggttgggattgttttgatccacct 44010939  T
Q  468 tgaacaaatcaccattaggattgagt 493  Q
    |||||||| ||| |||||||||||||    
T  44010938 tgaacaaagcactattaggattgagt 44010913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 384 - 493
Target Start/End: Original strand, 2120807 - 2120918
Alignment:
Q  384 ggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgtt-ttgattcaccttgaacaaatcacca 481  Q
    |||||||||||||||||||||||||| ||||||||| |  ||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||| ||| |    
T  2120807 ggtttagaagccaacatacaaactagggtttatagagattttctcttggcaacaactctagggttgggattgttgttgattcaccttggacaaaacacta 2120906  T
Q  482 ttaggattgagt 493  Q
    ||||||||||||    
T  2120907 ttaggattgagt 2120918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 391 - 491
Target Start/End: Complemental strand, 1099700 - 1099599
Alignment:
Q  391 aagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggatt 489  Q
    ||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||  ||||||||||||||| ||||||||| ||| |||||||||    
T  1099700 aagccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgaaattgttttgattcacgttgaacaaaacactattaggatt 1099601  T
Q  490 ga 491  Q
    ||    
T  1099600 ga 1099599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 7069699 - 7069799
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  7069699 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 7069798  T
Q  493 t 493  Q
    |    
T  7069799 t 7069799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 7074706 - 7074806
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  7074706 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 7074805  T
Q  493 t 493  Q
    |    
T  7074806 t 7074806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 15541258 - 15541158
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  15541258 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 15541159  T
Q  493 t 493  Q
    |    
T  15541158 t 15541158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 25405312 - 25405412
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  25405312 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 25405411  T
Q  493 t 493  Q
    |    
T  25405412 t 25405412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 395 - 493
Target Start/End: Complemental strand, 3320312 - 3320213
Alignment:
Q  395 caacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    ||||| ||||||||| ||||||||| ||  ||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  3320312 caacaaacaaactagggtttatagagaatctctattggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgagt 3320213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 395 - 493
Target Start/End: Complemental strand, 3325060 - 3324961
Alignment:
Q  395 caacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    ||||| ||||||||| ||||||||| ||  ||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  3325060 caacaaacaaactagggtttatagagaatctctattggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgagt 3324961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 475
Target Start/End: Complemental strand, 6067474 - 6067381
Alignment:
Q  384 ggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaac-aacactagggttgggattg-ttttgattcaccttgaacaaa 475  Q
    |||||||||||||||| ||||||||| |||||||| | ||||||||| | ||| ||||||||||||||||||| |||||||||||||||||||||    
T  6067474 ggtttagaagccaacaaacaaactagggtttatag-agaattctcttggtaacaaacactagggttgggattgtttttgattcaccttgaacaaa 6067381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 473
Target Start/End: Complemental strand, 1099759 - 1099717
Alignment:
Q  431 gcaacaacactagggttgggattgttttgattcaccttgaaca 473  Q
    |||||||||||||||||| |||||||||||||||| |||||||    
T  1099759 gcaacaacactagggttgagattgttttgattcacgttgaaca 1099717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 44011102 - 44011047
Alignment:
Q  292 ttttgttcctttttataagggatgttttccactataaatataaatcttgtatcaga 347  Q
    |||||||||  ||| | ||||||| ||||||||||||||||||| |||||||||||    
T  44011102 ttttgttccaattttttagggatgctttccactataaatataaaccttgtatcaga 44011047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 44017013 - 44016958
Alignment:
Q  292 ttttgttcctttttataagggatgttttccactataaatataaatcttgtatcaga 347  Q
    |||||||||  ||| | ||||||| ||||||||||||||||||| |||||||||||    
T  44017013 ttttgttccaattttttagggatgctttccactataaatataaaccttgtatcaga 44016958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 493
Target Start/End: Complemental strand, 12310243 - 12310179
Alignment:
Q  424 ttctcttgcaacaa-cactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    |||||||||||||| |||||||||||||||||     |||||||||||||||| ||| |||||||||||||    
T  12310243 ttctcttgcaacaaacactagggttgggattg-----attcaccttgaacaaa-cactattaggattgagt 12310179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 376 - 491
Target Start/End: Original strand, 10896906 - 10897022
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10896906 aaaaatagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcaccttgaacaa 10897005  T
Q  475 atcaccattaggattga 491  Q
    | ||| |||||||||||    
T  10897006 agcactattaggattga 10897022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 5858447 - 5858565
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5858447 aaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcaccttgaacaa 5858546  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  5858547 aacactattaggattgagt 5858565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 10613059 - 10612941
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||||||||||||||| |||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10613059 aaaaatagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcaccttgaacaa 10612960  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||| ||||||||    
T  10612959 agcactattaagattgagt 10612941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 29914234 - 29914116
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29914234 aaaaacagggtttagaagccaacattcaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcaccttgaacaa 29914135  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  29914134 agcactattaggattgagt 29914116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 47878452 - 47878334
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  47878452 aaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcaccttgaacaa 47878353  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  47878352 agcactattaggattgagt 47878334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 366 - 493
Target Start/End: Original strand, 38002760 - 38002888
Alignment:
Q  366 acactgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattca 464  Q
    |||||||||| |||| ||| |||||||| ||||||||||||||| ||||||||| || |||||||| ||||||||||||||||| |||||||||||||||    
T  38002760 acactgtgtagaaaacaggatttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgagattgttttgattca 38002859  T
Q  465 ccttgaacaaatcaccattaggattgagt 493  Q
    ||||||||||| |||||||||| ||||||    
T  38002860 ccttgaacaaaacaccattaggtttgagt 38002888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 370 - 493
Target Start/End: Complemental strand, 47883169 - 47883045
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcacctt 468  Q
    |||||| |||| ||| |||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||| |||||||||||||||||||||||||    
T  47883169 tgtgtagaaaacaggatttagaagccaacatacaaactagggtttatagataatttctcttggcaacaacactatggttgggattgttttgattcacctt 47883070  T
Q  469 gaacaaatcaccattaggattgagt 493  Q
    ||||||| ||| |||||||||||||    
T  47883069 gaacaaaacactattaggattgagt 47883045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 382 - 493
Target Start/End: Original strand, 11079424 - 11079536
Alignment:
Q  382 agggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcacc 480  Q
    |||||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||     
T  11079424 agggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcatcttgaacaaaacact 11079523  T
Q  481 attaggattgagt 493  Q
    || ||||||||||    
T  11079524 atcaggattgagt 11079536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 382 - 493
Target Start/End: Complemental strand, 27762261 - 27762149
Alignment:
Q  382 agggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcacc 480  Q
    |||||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||| |||||| |||     
T  27762261 agggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgagattgttttgattcaccttaaacaaagcact 27762162  T
Q  481 attaggattgagt 493  Q
    |||||||||||||    
T  27762161 attaggattgagt 27762149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 54193126 - 54193245
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattg-ttttgattcaccttgaaca 473  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||| || ||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  54193126 aaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgtttttgattcaccttgaaca 54193225  T
Q  474 aatcaccattaggattgagt 493  Q
    || ||| |||||||||||||    
T  54193226 aagcactattaggattgagt 54193245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 353 - 489
Target Start/End: Original strand, 3329770 - 3329908
Alignment:
Q  353 gtgtagaaacaaaacactgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaa-caacactagggttggg 450  Q
    |||||||||||||||| |||  | |||| |||||||||||||||||||||||||||| ||||||||| || ||||||| ||||  |||||||||||||||    
T  3329770 gtgtagaaacaaaacattgtagagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaataaacactagggttggg 3329869  T
Q  451 attgttttgattcaccttgaacaaatcaccattaggatt 489  Q
    | ||||||||||||||||||||||| ||| |||||||||    
T  3329870 aatgttttgattcaccttgaacaaagcactattaggatt 3329908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 4535515 - 4535633
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| |||||||||||||||||||||||||||| ||| ||||| || |||||||| ||||||||||||||||||| |||||||||||||| ||||||||    
T  4535515 aaaaacagggtttagaagccaacatacaaactagggttcatagagaatttctcttggcaacaacactagggttgggtttgttttgattcactttgaacaa 4535614  T
Q  475 atcaccattaggattgagt 493  Q
    | |||| ||||||||||||    
T  4535615 aacaccgttaggattgagt 4535633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 22626265 - 22626147
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| |||||||||||||||| |||||| || || |||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  22626265 aaaaacagggtttagaaaccaacatacaaactagggtttatggagaatttctcttggcaacaactctagggttgggattgttttgattcaccttgaacaa 22626166  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  22626165 aacactattaggattgagt 22626147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 370 - 493
Target Start/End: Complemental strand, 10949546 - 10949423
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgttttgattcacctt 468  Q
    |||||| |||| |||||||||||||||||||||||||||| ||||||||| || ||||||| |||||||| ||||||||  |||||||||||||||||||    
T  10949546 tgtgtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaactctagggtt-cgattgttttgattcacctt 10949448  T
Q  469 gaacaaatcaccattaggattgagt 493  Q
    |||||||  || |||||||||||||    
T  10949447 gaacaaagtactattaggattgagt 10949423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 384 - 493
Target Start/End: Original strand, 16462112 - 16462222
Alignment:
Q  384 ggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgttttgattcaccttgaacaaatcaccat 482  Q
    ||||||||| |||||||||||||||| ||||| ||| || ||||||| ||||||||  ||||||||||||||||||||||||||||||||||| ||| ||    
T  16462112 ggtttagaaaccaacatacaaactagggtttacagagaatttctcttagcaacaactatagggttgggattgttttgattcaccttgaacaaaacactat 16462211  T
Q  483 taggattgagt 493  Q
    |||||||||||    
T  16462212 taggattgagt 16462222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 370 - 489
Target Start/End: Complemental strand, 10595321 - 10595201
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcacctt 468  Q
    |||||| |||| | ||||||||| |||||||||||||||| ||||||||| || || ||||| |||||||||||||||| |||||||||||||||||| |    
T  10595321 tgtgtagaaaaaaaggtttagaaaccaacatacaaactagggtttatagagaatttatcttggcaacaacactagggtttggattgttttgattcaccat 10595222  T
Q  469 gaacaaatcaccattaggatt 489  Q
    ||||||| ||| |||||||||    
T  10595221 gaacaaagcactattaggatt 10595201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 54188409 - 54188528
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattg-ttttgattcaccttgaaca 473  Q
    ||||| ||||||||||| |||||||||||||||  ||||||||| || ||||||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  54188409 aaaaacagggtttagaaaccaacatacaaactaaggtttatagagaatttctcttggcaacaacactaggtttgggattgtttttgattcaccttgaaca 54188508  T
Q  474 aatcaccattaggattgagt 493  Q
    || ||| ||||| |||||||    
T  54188509 aagcactattagaattgagt 54188528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 20031595 - 20031481
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||||||     |||||||||  |||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20031595 aaaaacagggtttagaagcc----gacaaactaggctttatagagaatttctcttggcaacaacactagggttgggattgttttgattcaccttgaacaa 20031500  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  20031499 agcactattaggattgagt 20031481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 6303229 - 6303329
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  6303229 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 6303328  T
Q  493 t 493  Q
    |    
T  6303329 t 6303329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 10094337 - 10094237
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  10094337 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 10094238  T
Q  493 t 493  Q
    |    
T  10094237 t 10094237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 10100354 - 10100254
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  10100354 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 10100255  T
Q  493 t 493  Q
    |    
T  10100254 t 10100254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 10201217 - 10201117
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  10201217 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 10201118  T
Q  493 t 493  Q
    |    
T  10201117 t 10201117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 27544192 - 27544292
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  27544192 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 27544291  T
Q  493 t 493  Q
    |    
T  27544292 t 27544292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 10208263 - 10208163
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  10208263 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattacgattgag 10208164  T
Q  493 t 493  Q
    |    
T  10208163 t 10208163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 370 - 493
Target Start/End: Original strand, 13893356 - 13893481
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaa-cactagggttgggattg-ttttgattcacc 466  Q
    |||||| |||| | |||||||||| ||||||| ||||||| ||||||||| || |||||||| |||||| ||||||||||||||||| ||||||||||||    
T  13893356 tgtgtagaaaacaaggtttagaagtcaacataaaaactagggtttatagagaa-ttctcttggcaacaaacactagggttgggattgtttttgattcacc 13893454  T
Q  467 ttgaacaaatcaccattaggattgagt 493  Q
    |||||||||  ||| |||| |||||||    
T  13893455 ttgaacaaaataccgttagaattgagt 13893481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 493
Target Start/End: Original strand, 7417964 - 7418083
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcacctt 468  Q
    |||||| ||||  ||||||||||||||||||| ||||||| ||||||| | || |||||||| ||| ||||||| ||     |||||||| |||||||||    
T  7417964 tgtgtagaaaacggggtttagaagccaacataaaaactagggtttataaagaatttctcttggcaataacactaagg-----attgttttaattcacctt 7418058  T
Q  469 gaacaaatcaccattaggattgagt 493  Q
    ||||||| |||||||| ||||||||    
T  7418059 gaacaaaacaccattatgattgagt 7418083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 384 - 493
Target Start/End: Original strand, 16996784 - 16996894
Alignment:
Q  384 ggtttagaagccaacatacaaactagcgtttatagaaaaattctcttgcaac--aacactagggttgggattgttttgattcaccttgaacaaatcacca 481  Q
    |||||||||||||||| ||||||||| ||||||||| || ||||||||  |   |||||||||||||| | ||||||||||||||| ||| ||| |||      
T  16996784 ggtttagaagccaacaaacaaactagggtttatagagaa-ttctcttggtaataaacactagggttggaaatgttttgattcacctagaataaaacactg 16996882  T
Q  482 ttaggattgagt 493  Q
    ||||||||||||    
T  16996883 ttaggattgagt 16996894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 7417666 - 7417732
Alignment:
Q  280 ttttgggcatgattttgttcctttttataagggatgttttccactataaatataaatcttgtatcaga 347  Q
    ||||||||||| |||||||||  ||| | ||||||| ||||||||||||||||||| |||||||||||    
T  7417666 ttttgggcatg-ttttgttccaatttttgagggatgctttccactataaatataaaccttgtatcaga 7417732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 431
Target Start/End: Complemental strand, 48390501 - 48390446
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg 431  Q
    ||||| |||||||||||||| ||||||||||||| ||||||||| || ||||||||    
T  48390501 aaaaacagggtttagaagccgacatacaaactagggtttatagagaatttctcttg 48390446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 433 - 474
Target Start/End: Complemental strand, 42297879 - 42297838
Alignment:
Q  433 aacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    |||||||||||| ||| |||||||||||||||||||||||||    
T  42297879 aacaacactaggattgagattgttttgattcaccttgaacaa 42297838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 475
Target Start/End: Complemental strand, 15823830 - 15823791
Alignment:
Q  436 aacactagggttgggattgttttgattcaccttgaacaaa 475  Q
    |||||||||| || ||||||||||||||||||||||||||    
T  15823830 aacactagggctgagattgttttgattcaccttgaacaaa 15823791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 475
Target Start/End: Complemental strand, 27703390 - 27703351
Alignment:
Q  436 aacactagggttgggattgttttgattcaccttgaacaaa 475  Q
    ||||||||| || |||||||||||||||||||||||||||    
T  27703390 aacactaggatttggattgttttgattcaccttgaacaaa 27703351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 488
Target Start/End: Original strand, 26763000 - 26763052
Alignment:
Q  436 aacactagggttgggattgttttgattcaccttgaacaaatcaccattaggat 488  Q
    ||||||||||||| ||||| |||||||||||||| ||||| ||  ||||||||    
T  26763000 aacactagggttgtgattgatttgattcaccttggacaaaacattattaggat 26763052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 16226 - 16344
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||||||||||| |||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16226 aaaaacagggtttagaagccaacattcaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcaccttgaacaa 16325  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  16326 agcactattaggattgagt 16344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 188523 - 188405
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  188523 aaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcaccttgaacaa 188424  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  188423 aacactattaggattgagt 188405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 1240329 - 1240447
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| |  ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1240329 aaaaacagggtttagaagccaacatacaaactagggtttatagatattttctctttgcaacaacactagggttgggattgttttgattcaccttgaacaa 1240428  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  1240429 aacactattaggattgagt 1240447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 22672735 - 22672853
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22672735 aaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgattcaccttgaacaa 22672834  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  22672835 agcactattaggattgagt 22672853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 262 - 490
Target Start/End: Complemental strand, 11962814 - 11962599
Alignment:
Q  262 agaaaaaacagattgtatttttgggcatgattttgttccttttt-ataagggatgttttccactataaatataaatcttgtatcagaatatggtgtagaa 360  Q
    |||||||||||||  |||||||| || ||||||||||||||||| || ||||||| ||||||||||||||||||| |||||||||   ||||            
T  11962814 agaaaaaacagatcatatttttgagcctgattttgttccttttttatgagggatgctttccactataaatataaaccttgtatca---tatg-------- 11962726  T
Q  361 acaaaacactgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttg 459  Q
        || | |||||| |||| |||||||||||||||||||||||||||  ||| ||||| || |||||||| ||||||||||||||||| ||||||||||    
T  11962725 ----aatattgtgtagaaaacagggtttagaagccaacatacaaactatggttcatagagaatttctcttggcaacaacactagggttgagattgttttg 11962630  T
Q  460 attcaccttgaacaaatcaccattaggattg 490  Q
    ||||||| |||||||| ||| ||||||||||    
T  11962629 attcaccatgaacaaagcactattaggattg 11962599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 377 - 493
Target Start/End: Complemental strand, 31782738 - 31782620
Alignment:
Q  377 aaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaa-cactagggttgggattgttttgattcaccttgaacaa 474  Q
    |||| |||||||||||||||||||||||||||| ||||||||| || |||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  31782738 aaaacagggtttagaagccaacatacaaactagggtttatagataatttctcttggcaacaaacactagggttgggattgttttgattcaccttgaacaa 31782639  T
Q  475 atcaccattaggattgagt 493  Q
    | |||  ||||||||||||    
T  31782638 aacactgttaggattgagt 31782620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 384 - 493
Target Start/End: Complemental strand, 2298274 - 2298164
Alignment:
Q  384 ggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccat 482  Q
    ||||||||| |||||||||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||    
T  2298274 ggtttagaaaccaacatacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactat 2298175  T
Q  483 taggattgagt 493  Q
    |||||||||||    
T  2298174 taggattgagt 2298164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 384 - 493
Target Start/End: Original strand, 25452404 - 25452514
Alignment:
Q  384 ggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccat 482  Q
    ||||||||| |||||||||||||||| ||||||||| || |||||||| ||||||| |||| ||||||||||||||||||||||||||||||| ||| ||    
T  25452404 ggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaactctagcgttgggattgttttgattcaccttgaacaaagcactat 25452503  T
Q  483 taggattgagt 493  Q
    |||||||||||    
T  25452504 taggattgagt 25452514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 384 - 493
Target Start/End: Original strand, 40222672 - 40222782
Alignment:
Q  384 ggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccat 482  Q
    |||||||||||||||||||||||||| ||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||||||  |  ||    
T  40222672 ggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgagattgttttgattcaccttgaacaaagtattat 40222771  T
Q  483 taggattgagt 493  Q
    |||||||||||    
T  40222772 taggattgagt 40222782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 376 - 469
Target Start/End: Original strand, 42238204 - 42238298
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaacaacactagggttgggattgttttgattcaccttg 469  Q
    ||||| |||||||||||||||||||||||||||| ||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||    
T  42238204 aaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctctttgcaacaacactagggttgggattgttttgattcaccttg 42238298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 385 - 493
Target Start/End: Complemental strand, 35385724 - 35385615
Alignment:
Q  385 gtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccatt 483  Q
    |||||||| | |||||||||||||| ||||||||| || |||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| |||    
T  35385724 gtttagaaactaacatacaaactagggtttatagagaatttctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactatt 35385625  T
Q  484 aggattgagt 493  Q
    ||||||||||    
T  35385624 aggattgagt 35385615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 370 - 493
Target Start/End: Original strand, 10627257 - 10627383
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaac-aacactagggttgggattg-ttttgattcacc 466  Q
    |||||| |||| |||||||||||||||||||||||||||| ||||||||| || ||||||| ||||| |||||||||||| |||||| ||||||||||||    
T  10627257 tgtgtagaaaacagggtttagaagccaacatacaaactagtgtttatagagaatttctcttagcaacaaacactagggttaggattgtttttgattcacc 10627356  T
Q  467 ttgaacaaatcaccattaggattgagt 493  Q
    ||||||||| |||  ||||||||||||    
T  10627357 ttgaacaaaacactgttaggattgagt 10627383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 370 - 493
Target Start/End: Complemental strand, 16093578 - 16093454
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctctt-gcaac-aacactagggttgggattgttttgattcacct 467  Q
    |||||| |||| |||||||||||||||||||||||||||| ||||||||| || ||||||| ||||| |||||||||||||||||  |||||||||||||    
T  16093578 tgtgtagaaaacagggtttagaagccaacatacaaactagggtttatagataatttctcttggcaacaaacactagggttgggatctttttgattcacct 16093479  T
Q  468 tgaacaaatcaccattaggattgagt 493  Q
    |||| ||| ||| |||||||||||||    
T  16093478 tgaa-aaaacactattaggattgagt 16093454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 376 - 493
Target Start/End: Original strand, 28786307 - 28786423
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttgcaacaacactagggttgggattgttttgattcaccttgaacaaa 475  Q
    ||||| ||| |||||||| |||||||||||| || ||| ||| | || |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28786307 aaaaacaggatttagaaggcaacatacaaacaagggtt-ataaagaacttctcttgcaacaacactagggttggaattgttttgattcaccttgaacaaa 28786405  T
Q  476 tcaccattaggattgagt 493  Q
     ||| |||||||||||||    
T  28786406 gcactattaggattgagt 28786423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 384 - 475
Target Start/End: Original strand, 25445401 - 25445493
Alignment:
Q  384 ggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaa 475  Q
    ||||||||| |||||||||||||||| ||||||||| || |||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  25445401 ggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaa 25445493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 377 - 493
Target Start/End: Complemental strand, 17841530 - 17841412
Alignment:
Q  377 aaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttgc--aacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    |||| ||||||||||| ||| |||||||||||| ||||||||| || ||||||||   ||||| |||||||||| |||||||||||||||||||||||||    
T  17841530 aaaacagggtttagaaaccatcatacaaactagggtttatagagaatttctcttggcaaacaatactagggttgagattgttttgattcaccttgaacaa 17841431  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  17841430 agcactattaggattgagt 17841412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 259 - 392
Target Start/End: Original strand, 20718356 - 20718491
Alignment:
Q  259 tacagaaaaaacagattgtatttttgggcatgattttgttcctttttataagggatgttttccactataaatataaatcttgtatca---gaatatggtg 355  Q
    ||||||||||| ||||  ||||||| ||| |||||||||||||||||||||| |||| ||||||||||||||||||| |||| ||||   |||||| |||    
T  20718356 tacagaaaaaa-agatcatattttttggcctgattttgttcctttttataagagatgctttccactataaatataaaccttgcatcagatgaatattgtg 20718454  T
Q  356 tagaaacaaaacactgtgtaaaaaatagggtttagaa 392  Q
    ||||||||||||| |||||| |||  |||||||||||    
T  20718455 tagaaacaaaacattgtgtagaaatcagggtttagaa 20718491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 1170730 - 1170830
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  1170730 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 1170829  T
Q  493 t 493  Q
    |    
T  1170830 t 1170830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 370 - 493
Target Start/End: Complemental strand, 26406760 - 26406636
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaa-cactagggttgggattgttttgattcacct 467  Q
    |||||| |||| ||||||||||| |||||| ||||||||| ||||||||| || |||||||| |||||| ||||||||||| ||||||||||||||||||    
T  26406760 tgtgtagaaaacagggtttagaaaccaacaaacaaactagggtttatagagaa-ttctcttggcaacaaacactagggttgagattgttttgattcacct 26406662  T
Q  468 tgaacaaatcaccattaggattgagt 493  Q
    |||||||| ||   ||||||||||||    
T  26406661 tgaacaaaacattgttaggattgagt 26406636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 370 - 487
Target Start/End: Original strand, 25838002 - 25838120
Alignment:
Q  370 tgtgtaaaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttgc-aacaa-cactagggttgggattgttttgattcacct 467  Q
    |||||| |||| | |||||||||||||||| | ||||||  ||||||||| || ||||||||  ||||| ||||||||||| ||||||||||||||||||    
T  25838002 tgtgtagaaaacaaggtttagaagccaacaaagaaactatggtttatagagaa-ttctcttggtaacaaacactagggttgagattgttttgattcacct 25838100  T
Q  468 tgaacaaatcaccattagga 487  Q
    |||||||| ||| |||||||    
T  25838101 tgaacaaaacactattagga 25838120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 493
Target Start/End: Original strand, 4897792 - 4897844
Alignment:
Q  441 tagggttgggattgttttgattcaccttgaacaaatcaccattaggattgagt 493  Q
    |||||||| ||||||||| ||||||||||||||||||||  ||||||||||||    
T  4897792 tagggttgagattgttttcattcaccttgaacaaatcactgttaggattgagt 4897844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 279 - 347
Target Start/End: Complemental strand, 34034655 - 34034589
Alignment:
Q  279 tttttgggcatgattttgttcctttttataagggatgttttccactataaatataaatcttgtatcaga 347  Q
    ||||||||| ||| |||||||| |||| ||||||||| ||  ||||||||||||||| |||||||||||    
T  34034655 tttttgggcttgaatttgttccattttttaagggatgctt--cactataaatataaaccttgtatcaga 34034589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 493
Target Start/End: Complemental strand, 15445493 - 15445434
Alignment:
Q  437 acactagggttgggattgttttgat---tcaccttgaacaaatcaccattaggattgagt 493  Q
    |||||||||||| ||||||||||||   |||||||||||||| |||  ||||||||||||    
T  15445493 acactagggttgagattgttttgatatttcaccttgaacaaaacactgttaggattgagt 15445434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 489
Target Start/End: Complemental strand, 25562506 - 25562458
Alignment:
Q  441 tagggttgggattgttttgattcaccttgaacaaatcaccattaggatt 489  Q
    |||| ||| |||||||||||||||||||||||||| |||  ||||||||    
T  25562506 taggattgagattgttttgattcaccttgaacaaaacactcttaggatt 25562458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 376 - 493
Target Start/End: Complemental strand, 17267 - 17149
Alignment:
Q  376 aaaaatagggtttagaagccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaa 474  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||||||||||| |||| |||||||||    
T  17267 aaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaacactagggttgggattgttttgtttcatcttgaacaa 17168  T
Q  475 atcaccattaggattgagt 493  Q
    | ||| |||||||||||||    
T  17167 agcactattaggattgagt 17149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 31060 - 31160
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  31060 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 31159  T
Q  493 t 493  Q
    |    
T  31160 t 31160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 224738 - 224838
Alignment:
Q  394 ccaacatacaaactagcgtttatagaaaaattctcttg-caacaacactagggttgggattgttttgattcaccttgaacaaatcaccattaggattgag 492  Q
    |||||| ||||||||| ||||||||| ||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  224738 ccaacaaacaaactagggtttatagagaatctctcttggcaacaactctagggttgggattgttttgattcaccttgaacaaaacactattaggattgag 224837  T
Q  493 t 493  Q
    |    
T  224838 t 224838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1764 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1764
Description:

Target: scaffold1764; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 1345 - 1391
Alignment:
Q  384 ggtttagaagccaacatacaaactagcgtttatagaaaaattctctt 430  Q
    ||||||||| |||||||||||||||| ||||||||| || |||||||    
T  1345 ggtttagaaaccaacatacaaactagggtttatagagaatttctctt 1391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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