View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9363_low_13 (Length: 384)
Name: NF9363_low_13
Description: NF9363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9363_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 373
Target Start/End: Original strand, 6343114 - 6343468
Alignment:
| Q |
13 |
cattttcaattgtcactatttccttcatcgctcatatgaattagatgttaaaaagtaggttgtatcagactttcaaaatatcatatttaaacctaaaaaa |
112 |
Q |
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| T |
6343114 |
cattttcaattgtgactatttccttcatcgctcatatgaattagctgttaaaaggtaggtcgtatcagactttcaaaatgtcatatttaaacctaaaaaa |
6343213 |
T |
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| Q |
113 |
taaatctatgatagaccgcacgctagacataggccttaaattttctgacagattatacttaggtcttgcaaaatttagttcgaccttgcctattatattt |
212 |
Q |
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| T |
6343214 |
taaatttatgatagaccgcatgctagatacaggccttaaattttttaacagattatccttaagtcttgcaaaatttagttcgacc-tgcc-----tattt |
6343307 |
T |
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| Q |
213 |
caaaaattgctcaaattcatttcataattgttcattcccttaattcatcggaagttaactgttgctcggtatttttcagcggcagttcagatcggtttat |
312 |
Q |
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| T |
6343308 |
caaaaattgctcaaatctatttcataattgttcattcgcttaattcattggaagttaactgttgctcgatatttttcagcggcagttcagatcggtttat |
6343407 |
T |
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| Q |
313 |
tcattttttaagttggtgtaaatagcaatatgtaccccatattcgcttcccatgatgtcca |
373 |
Q |
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| T |
6343408 |
tcattttttaagttgatgtaaatagaaatatgtaccccatattcgcttcccatgacgtcca |
6343468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 259
Target Start/End: Original strand, 6342387 - 6342586
Alignment:
| Q |
60 |
ttaaaaagtaggttgtatcagactttcaaaatatcatatttaaacctaaaaaataaatctatgatagaccgcacgctagacataggccttaaattttctg |
159 |
Q |
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||||| ||||||| ||||||| ||| ||||| ||| ||| ||||||||| |||||| ||| || | || || ||||||||| | |||||| || || |
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| T |
6342387 |
ttaaatagtaggtcatatcagatttttaaaatgtcacattcaaacctaaataataaacctacgacacgccacatgctagacattgatcttaaaaattttg |
6342486 |
T |
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| Q |
160 |
acagattatacttaggtcttgcaaaatttagttcgaccttgcctattatatttcaaaaattgctcaaattcatttcataattgttcattcccttaattca |
259 |
Q |
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| T |
6342487 |
gtagattagacttagattttgcaaaatttagttcggcctaacctattatattttgaagattgctctaatccatgtcctaattattcatcccattaattca |
6342586 |
T |
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