View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9363_low_19 (Length: 343)
Name: NF9363_low_19
Description: NF9363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9363_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 5 - 329
Target Start/End: Complemental strand, 2243716 - 2243392
Alignment:
| Q |
5 |
tgcatgaaggctcatatgtttgaaataattttgcatgatgtggaacaattatcttatatgtatgcctataagataatttcatgagattaactatctaaac |
104 |
Q |
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| T |
2243716 |
tgcatgaaggctcatatgtttgaaataattttgcatgatgtggaacaattatcttatatgtatgcctataagataatttcatgagattaactatctaaac |
2243617 |
T |
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| Q |
105 |
ttttacaaggggtccatttttgaagagcattatctgtttagattctattgctccattgtctaaatttcagaaaccaaaggttcaccatgttaaattaaag |
204 |
Q |
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| T |
2243616 |
ttttacaaggggtccattttttaagagcattatctgtttagattctattgctccattgtctaaatttcagaaaccaaaggttcaccatgttaaattaaag |
2243517 |
T |
|
| Q |
205 |
tatataatacttggtctagacacccaaaaaattattgaatataataaataactttatgttgctttgttcaaaaagagaaaaactttatgttgcttgatac |
304 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2243516 |
tatataatatttggtctagacaccaaaaaaattattgaatataataaataactttatgttgctttgttcaaaaagagaaaaactttatgttgcttgatac |
2243417 |
T |
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| Q |
305 |
tcccttctctattactgaaaaatgt |
329 |
Q |
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||||||||||||||||||||||||| |
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| T |
2243416 |
tcccttctctattactgaaaaatgt |
2243392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 31780462 - 31780416
Alignment:
| Q |
6 |
gcatgaaggctcatatgtttgaaataattttgcatgatgtggaacaa |
52 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
31780462 |
gcatgaaggctcatatgtttgaaatgatcttgcatgatgtggaacaa |
31780416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 201
Target Start/End: Complemental strand, 29057477 - 29057430
Alignment:
| Q |
154 |
gctccattgtctaaatttcagaaaccaaaggttcaccatgttaaatta |
201 |
Q |
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|||||| ||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
29057477 |
gctccactgtctaaatctcaaaaaccaaaggttcaccatgttaaatta |
29057430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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