View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9363_low_24 (Length: 288)
Name: NF9363_low_24
Description: NF9363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9363_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 48107814 - 48108063
Alignment:
| Q |
19 |
acactgttttatttcaaggcattgacaacacaagaaagtttatgcaatataatgtttaagaattaataatcatattaaaagatgtgtcaatattattacc |
118 |
Q |
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| T |
48107814 |
acactgttttattccaaggcattgacaacacaagaaaatttatgcaat-----gtttaagaattaataatcatattaaaagatgtgtca------ttacc |
48107902 |
T |
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| Q |
119 |
tcaatagtagcaaaataatcgtagtccaaagaatgaacgcctagccctgcatatatggtgtgaagatatatatgttagatattaaaagaattgtagcact |
218 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48107903 |
tcaatagtagcaaaataatcatagtccaaagaatgaacgcctagccctgcatatatggtgtgaagatatatatgttagatattaaaagaatagtagcact |
48108002 |
T |
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| Q |
219 |
gaattat--agagagggagagattgaaacctgagataaataaaaggaaagaggtggtgatg |
277 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48108003 |
gaattatagagagagggagagattgaaacctgagataaataaaaggaaagaggtggtgatg |
48108063 |
T |
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