View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9363_low_28 (Length: 257)
Name: NF9363_low_28
Description: NF9363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9363_low_28 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 42082484 - 42082242
Alignment:
| Q |
15 |
ttggtgttctgaagtttacaagttacaacactcagacacagtgcgcaccaaccacttgcgctagacttcggtagtggtttaaggcatcggactatactta |
114 |
Q |
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| T |
42082484 |
ttggtattctgaagtttacaagttacaacactcagacacagtgcgcaccaaccacttgcgctagacttaggtagtggtttaaggcatcggactatactta |
42082385 |
T |
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| Q |
115 |
tctttcttttaatccattttatctaatgtggaattaatcactcacttttgagttccaacaatagtggtagtgaatggggtcaatgaatagatagtgctat |
214 |
Q |
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| T |
42082384 |
tctttcttttaatccattttatctaatgtggaattaatcactcacttttgagttccaacaatagtggtagtggatggggtcaatgaatagatagtgctat |
42082285 |
T |
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| Q |
215 |
aaatgttctctccattttgtagattttattttcctcgcaatta |
257 |
Q |
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| T |
42082284 |
aaatgttctctccattttgtagattttattttcctcgcaatta |
42082242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 42079707 - 42079639
Alignment:
| Q |
187 |
aatggggtcaatgaatagatagtgctataaatgttctctccattttgtagattttattttcctcgcaat |
255 |
Q |
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| T |
42079707 |
aatgaggtcaatgaatagatagtgttataactgttctctccattttgtagaatttattttcctcacaat |
42079639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 35461893 - 35461937
Alignment:
| Q |
37 |
ttacaacactcagacacagtgcgcaccaaccacttgcgctagact |
81 |
Q |
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| T |
35461893 |
ttacaacactcacacacactgcgcaccaaccacttgcgctggact |
35461937 |
T |
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