View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9363_low_3 (Length: 507)
Name: NF9363_low_3
Description: NF9363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9363_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 182; Significance: 4e-98; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 266 - 489
Target Start/End: Complemental strand, 50573177 - 50572950
Alignment:
| Q |
266 |
ggcttagttttccagtgtaattaacttcaagtggaggacatcgataatatagatacatagtaggaatgtgataaaccnnnnnnngaacaagaacacacct |
365 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50573177 |
ggcttagttttccagtgtaattaacttcgagtggaggacatcaataatatagatacatagtaggaatgtgataaaccaaaaaaagaacaagaacacacct |
50573078 |
T |
|
| Q |
366 |
ttcttgctgccaatttagattgttgctca----tagctcaaatacaaatctaggtaaattagaacagcataagaaacagaattccttcaaagtactatgc |
461 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50573077 |
ttcttgctgccaatttagattgttgctcacttttagctcaaatacaaatctaggtaaattagaacagcataagaaacagaattccttcaaagtactatgc |
50572978 |
T |
|
| Q |
462 |
caaattatttggttttgcaaaaggaaca |
489 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
50572977 |
caaattatttggttttgcaaaaggaaca |
50572950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 50573459 - 50573252
Alignment:
| Q |
1 |
aagaccatccaaccatctgcggaagttgacattcatatggcttcgaatcttgaaatcctaaagcataaataaaggctaaggaatcaagtattacgagnnn |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50573459 |
aagaccatccaaccatttgcggaagttgacattcatctggctgcgaatcttgaaatcctaaagcataaataaaggcaaaggaatcaagtattacgagaaa |
50573360 |
T |
|
| Q |
101 |
nnnncacaaattgttgatgaaacaattccagtgaagtggataatctgaaagagaagaagttgtacctcaaatttagccggaaaaccaagcttttgcatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50573359 |
aaaacacaaattgttgatgaaacaattccagtgaagtggataatctgaaagagaagaagttgtacctcaaatttagccggaaaaccaagcttttgcatga |
50573260 |
T |
|
| Q |
201 |
taccggtc |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
50573259 |
taccggtc |
50573252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 280 - 488
Target Start/End: Complemental strand, 50567334 - 50567120
Alignment:
| Q |
280 |
gtgtaattaacttcaagtggaggacatcgataatatagatacatagtaggaatgtgataaaccnnnnnnngaacaagaacacacctttcttgctgccaat |
379 |
Q |
| |
|
|||| |||||| || ||||||| ||||||||||||| |||||||| | ||||| ||||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
50567334 |
gtgtgattaacctcgagtggagaacatcgataatatgcatacatagcatgaatgagataaacagataaaagaacaagaacacaccttccttgcagccaat |
50567235 |
T |
|
| Q |
380 |
ttagattgttgctcatag-ctcaaatacaaatctaggtaaattagaacagcataagaaacagaatt----ccttc-aaagtactatgccaaattatttgg |
473 |
Q |
| |
|
||||| |||| ||||| | ||| | ||||||||||| ||||||| |||| ||||||||| |||| | ||||| ||||||| ||| ||||||||||| |
|
|
| T |
50567234 |
ttagactgtttctcattgcctccagtacaaatctagttaaattacaacatcataagaaagagaaattaacccttcaaaagtacaatgtgaaattatttgg |
50567135 |
T |
|
| Q |
474 |
ttttgcaaaaggaac |
488 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
50567134 |
ttttgcaaaacgaac |
50567120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 394
Target Start/End: Original strand, 9986620 - 9986664
Alignment:
| Q |
350 |
gaacaagaacacacctttcttgctgccaatttagattgttgctca |
394 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
9986620 |
gaacaagaacacaccttccttgctgccaatttagactgttgctca |
9986664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 50562138 - 50562094
Alignment:
| Q |
46 |
aatcttgaaatcctaaagcataaataaaggctaaggaatcaagta |
90 |
Q |
| |
|
||||| ||||||||||||||||| ||||| | ||||||||||||| |
|
|
| T |
50562138 |
aatctggaaatcctaaagcataagtaaagccgaaggaatcaagta |
50562094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 50567514 - 50567427
Alignment:
| Q |
113 |
gttgatgaaacaattccagtgaagtggataatctgaaagagaagaagttgtacctcaaatttagccggaaaaccaagcttttgcatgatac |
203 |
Q |
| |
|
||||||||||||||| ||| ||| |||||| |||||||| ||| ||||||||| |||||| | ||||||||| |||||| ||||||| |
|
|
| T |
50567514 |
gttgatgaaacaatttcagcgaa---gataatatgaaagagtagatgttgtaccttaaatttgacgggaaaaccacacttttgtatgatac |
50567427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University