View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9363_low_34 (Length: 251)
Name: NF9363_low_34
Description: NF9363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9363_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 56168807 - 56169055
Alignment:
| Q |
1 |
gcaaggcatgaagcttccaaattcaagccaggatctattcctgacagaccacctaggcgaaatgacactgtttttgcccattagagaactttcttttgag |
100 |
Q |
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| T |
56168807 |
gcaaggcatgaagcttccaaattcaagccaggatctattcctgacagaccacctaggcgaaatgacactgtttttgcccattaaagaactttcttttgag |
56168906 |
T |
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| Q |
101 |
gtttaaaggcatatatgcgtattgcaggtaataatatcaatgaacattttgctagtgatgcttaggagcctaatatgtacggttatatataggatcgtgt |
200 |
Q |
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| T |
56168907 |
gtttaaaggcatatatgcgtattgcaggtaataatatcaatgaacattttactagtgatgcttaggagcctaatatgtgcggttatatataggatcgtgt |
56169006 |
T |
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| Q |
201 |
ataaagttcaattaaggcattccttttgccctgatatcactgtcattgc |
249 |
Q |
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| T |
56169007 |
ataaagttcaattaaggcattccttttgtcctgatatcattgtcattgc |
56169055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 706903 - 706659
Alignment:
| Q |
1 |
gcaaggcatgaagcttccaaattcaagccaggatctattcctgacagaccacctaggcgaaatgacactgtttttgcccattagagaactttcttttgag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| |
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| T |
706903 |
gcaaggcatgaagcttccaaattcaagccaggatctattcccgacagaccacctaggcgaaacgacactgtttttacccattagagaactttc--ttgag |
706806 |
T |
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| Q |
101 |
gtttaaaggcatatatgcgtattgcaggtaataatatcaatgaacattttgctagtgatgcttaggagcctaatatgtacggttatatataggatcgtgt |
200 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| || |||||||||||||| ||| |
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| T |
706805 |
gtttaaaggcatatatgcatattgcaggta--aatatcaatgaatattttgcaagtgatgcttaggagcctaatatgtgcgattatatataggatcttgt |
706708 |
T |
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| Q |
201 |
ataaagttcaattaaggcattccttttgccctgatatcactgtcattgc |
249 |
Q |
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|| || |||||||||||||||||||||| |||||||||| || |||||| |
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| T |
706707 |
atgaaattcaattaaggcattccttttgtcctgatatcattgccattgc |
706659 |
T |
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